Phalacrocorax aristotelis (European shag): 142063419
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Entry
142063419 CDS
T11493
Symbol
THOC2
Name
(RefSeq) THO complex subunit 2 isoform X1
KO
K12879
THO complex subunit 2
Organism
parx Phalacrocorax aristotelis (European shag)
Pathway
parx03013
Nucleocytoplasmic transport
parx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
parx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142063419 (THOC2)
09122 Translation
03013 Nucleocytoplasmic transport
142063419 (THOC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
parx03019
]
142063419 (THOC2)
03041 Spliceosome [BR:
parx03041
]
142063419 (THOC2)
Messenger RNA biogenesis [BR:
parx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
142063419 (THOC2)
Spliceosome [BR:
parx03041
]
Complex C
Other components
EJC/TREX
142063419 (THOC2)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
142063419 (THOC2)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
Motif
Other DBs
NCBI-GeneID:
142063419
NCBI-ProteinID:
XP_074963266
LinkDB
All DBs
Position
11:complement(18063740..18119559)
Genome browser
AA seq
1651 aa
AA seq
DB search
MEQRAPSPRVRRVRLPSFLAGRCVPSDPGPRLHHPGSRRHTGKMAALLPAEWIKNWEKGG
KNEFVQLCRALSENKSHDNMGFRDIQQALYELAYHVVRGNLKHDQASNVLGDVIEFREDM
PSILADVFCILDIETSCLEEKSKRDHFTQLVLACLYLVSDTVLKERLDPETLESLGLIKQ
SQQFNQKSVKIKTKLFYKQQKFNLLREENEGYAKLIAELGQDLSGNITSDLILENIKSLI
GCFNLDPNRVLDIILEVYECRPEYDDFFVPLIESYMYMCEPQTLCHILGFKFKFYQDPSG
ETPSSLYRVAAVLLQHNLIDLEDLYVHLLPGDNAIIEEHKREIVEAKQIVRKLTMVVLSS
EKTEEKEKEKEKEEEKTEKPPDNQKLGLLEALLKIGDWQHAQSIMDQMPPFYATSHKPIA
IALCQLVHVTIEPLYRRVGVPKGAKGSPISSLPNKRAPKQADSFEDLRKEVFNMLCYLGP
HLSHDPILFAKVVRLGKAFMKEVGTMKKFVSDRVVKFQSDGSKQEDKEKMEILFSCLLSI
TDQVLLPSLSLMDCNACMSEELWGMFKTFPYQYRYRLYGQWKNETYNSHPLLVKVKAQTI
DRAKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYILSQIQKYDNLITPVVDSLKYLTS
LNYDVLAYCIIEALANPEKERMKHDDTTISSWLQSLASFCGAVFRKYPIELAGLLQYVAN
QLKAGKSFDLLILKEVVQKMAGIEITEEMTMEQLEAMTGGEQLKAEGGYFGQIRNTKKSS
QRLKDALLDHDLALPLCLLMAQQRNGVIFQEGGEKHLKLVGKLYDQCHDTLVQFGGFLAS
NLSTEDYIKRVPSIDVLCNEFHTPHDAAFFLSRPMYAHHISSKYDELKKAEKGNKQQHKV
HKYITSCELVMAPVHDAVISLHLPKVWDDISPQFYATFWSLTMYDLAVPHSSYDREVNKL
KVQMKAIDDNQEMPPNKKKKEKERCTALQDKLLEEEKKQLEHVQRVLQRLKLEKDNWLLA
KSTKNETITKFLQLCIFPRCIFSAIDAVYCAHFVELVHQQKTPNFSTLLCYDRVFSDIIY
TVASCTENEASRYGRFLCCMLETVTRWHSDRVIYEKECGNYPGFLTILRATGFDGGNKAD
QLDYENFRHVVHKWHYKLTKASVHCLETGEYTHIRNILIVLTKILPWYPKVLNLGQALER
RVHKICQEEKEKRPDLYALAMGYSGQLKSRKPFMIPENEFHHKDPPARNAVAATVQNGPG
GAGMPTSLTLNTVRLEEGTTEETEKLKEKSQGVVKVINKAVNATPKVTTSNGNSASNSKI
IKEKDDKEKSGKEKDKEKKDKTPAAVPEMKALGKDGKDKPKEERANKDDKAREIKEKTPK
SDKEKEKVKKEEKASKEEKSKTVVTIVESKSTAEKEREKEPSRERDVAKEMKSKENAKGG
EKMPVAGSLKSPVPRSETSESEREQKRRKVDTHSSPSHSSTVKDNLNELKDSSAKHYINH
TTPTLSKSKEREVDKKDLDKSRERSREREKKDEKDRKDRKRDHSNSDREVPQDSTKRRKE
ENGTTGSSKHSKSESPSDSPRLNEKEKEKNKSKSSGKEKGDSIKAEKMEKSSSGSKKESR
HDKEKTEKKEKRDSTGGKEEKKHHKSSDKHR
NT seq
4956 nt
NT seq
+upstream
nt +downstream
nt
atggaacagcgcgcgccgtctcccagggtacggcgcgtccgcctcccgtcgttcctggcg
ggccgttgcgtcccctctgacccgggcccgcggctccaccatccgggctctcggcgccac
acggggaagatggcggcgctgctccccgccgagtggataaagaactgggagaaagggggc
aagaacgagtttgtgcaactatgtcgtgcactcagtgaaaacaaaagccatgataatatg
ggtttcagagatatccagcaggctttgtatgagcttgcttaccacgttgtcagaggaaac
ttaaaacatgatcaagcatctaatgttcttggtgatgtcattgaatttcgggaagacatg
ccttccatcctagctgatgtattctgcatattagatattgaaacaagttgtttagaagaa
aaaagtaagagggatcattttacccaactggtattagcctgtttgtaccttgtatctgac
actgtcctgaaggagcgtttagatccagagacgctggagtcgttaggacttatcaagcag
tcccaacagttcaatcagaaatctgttaaaataaagacaaagctattttacaagcaacag
aagtttaatttgttaagagaggagaatgaaggttatgcaaagctcattgcagaactgggg
caagacttatctggaaatattactagtgatttaattcttgaaaatatcaagtctttaata
ggatgttttaaccttgatcctaacagagttttggatattatcctagaagtctatgagtgc
aggcctgagtatgacgacttctttgtaccactgatagagtcttatatgtacatgtgtgaa
cctcaaactctatgccatatccttggattcaaattcaaattttatcaggatccaagtggt
gagacaccttcctccttatacagagttgctgctgtcctgttgcaacataatctcatagat
ttggaagatctttatgttcatcttcttccaggggataatgccatcattgaggaacacaag
cgagagatagtggaagctaagcaaattgtcaggaaacttacaatggtcgtcttatcctct
gaaaagactgaggaaaaggagaaggaaaaagaaaaagaggaggagaaaaccgaaaagcct
cctgataatcaaaagcttggtttattggaagccttattaaaaattggtgattggcagcac
gcacagagtattatggatcagatgcctccattttatgctacttcacacaagcctattgca
attgccctttgccagcttgtgcatgtgacaattgaacctctgtaccgcagagttggtgta
cctaagggagctaaagggtcaccaatttcttctttgccaaataagagagcaccaaaacaa
gcagacagctttgaggacttgagaaaggaagtgtttaacatgctttgttaccttggtcct
catctctcccatgatcccattttatttgcaaaagtggtgcgtcttggaaaagcatttatg
aaagaggttggaactatgaagaaattcgtcagtgacagagtggttaagtttcagtctgat
ggaagcaaacaagaagataaagagaaaatggagatactgtttagctgtttgttgagtatt
accgaccaagtcttgcttccctctctctctctgatggactgcaatgcatgcatgtctgaa
gaattatgggggatgttcaaaacttttccataccagtaccggtaccgtctttatgggcaa
tggaagaatgaaacatacaatagtcacccacttctagtgaaagttaaagctcaaaccata
gaccgagccaaatatatcatgaagcgtttaactaaggaaaatgtgaaaccctctggaaga
caaattgggaagctcagccacagcaatcctacaattttatttgattacattttatcacaa
atacaaaaatatgataacttaataactccggtggttgattcactgaaatacctcacttca
ctgaactatgatgtcttggcatactgtatcattgaagctctggcaaaccccgagaaagag
agaatgaagcacgatgacacaacaatctcaagctggctgcagagtctggctagcttttgt
ggtgcagttttccgaaaatacccaattgaacttgctggtctacttcaatatgtagccaac
caactgaaagctgggaaaagctttgatttgcttattttaaaagaggtagtacagaaaatg
gcagggatagaaattacagaagaaatgacaatggaacaattggaagccatgactggtgga
gaacaactaaaagctgagggtggatactttggccaaatcaggaatacaaaaaaatcttct
cagaggttgaaagatgcgttattggaccatgatcttgcccttccactgtgcctgcttatg
gctcaacagagaaatggtgtgatctttcaagagggaggggaaaaacatctgaagctggtg
ggaaaactgtatgatcagtgccatgacaccctggtacaatttggtgggtttttagcatcc
aatctaagcacagaggattacattaagcgagtgccttctattgatgttctctgtaatgaa
tttcacacaccccatgatgctgcatttttcctctcaagacccatgtatgcacaccatatt
tcatcaaagtatgatgaactaaaaaaagctgagaagggaaataaacagcagcacaaagtt
cacaaatacattacatcgtgtgagctggtgatggctcctgtccatgatgctgtgatttct
ctgcaccttcccaaggtttgggatgacatcagtcctcagttttatgctacgttctggtct
ttgacaatgtatgaccttgccgtcccacatagtagctatgacagagaagtcaataaactt
aaagtccagatgaaagccatagatgacaatcaggaaatgcctccaaataaaaagaaaaaa
gaaaaagaacgttgcacagctcttcaggacaagctccttgaagaggagaagaagcagttg
gagcatgtgcagcgggttctacagaggctgaaactagagaaggataactggcttctggca
aagtctaccaaaaatgagactatcacaaagtttttgcagttatgtatatttcctcgatgc
attttttcggcaatcgatgcagtttattgtgctcactttgtagaactggtgcatcagcag
aaaacacccaacttttccacgcttctctgctatgacagagttttctctgatattatatat
acagttgcaagttgcactgaaaatgaagctagtagatatggcaggttcttatgctgtatg
ctggagactgtgactagatggcacagtgacagagtcatatatgaaaaggaatgtggcaac
tatccaggcttcctaactatattacgggcaactggatttgatggtggaaataaagctgat
caattggattatgagaatttcagacatgtggtacacaaatggcactataagttaactaag
gcttctgtgcactgccttgaaacaggtgaatatacacatatcagaaatatcctgattgtg
ctgaccaaaatccttccgtggtatccaaaagtgctgaacctgggccaagccttggaaaga
agagtacataagatctgtcaggaagagaaagagaagagacctgatctatatgcattggct
atgggctattctgggcagttgaaaagtaggaagcctttcatgatacctgaaaatgaattc
catcacaaagacccacctgccaggaatgctgtagctgcaacagtacaaaatgggccaggt
ggtgctgggatgcctacatctctcacactaaatacagttagactggaagaaggcactact
gaggagactgagaaactgaaggagaagtctcagggtgtggtaaaagttattaataaagct
gtcaatgctacaccgaaggtgacaacaagcaatggaaacagtgcttctaatagcaaaatt
attaaagagaaagatgataaagaaaaaagtgggaaggaaaaagataaagaaaagaaagac
aagactccagctgccgttccagagatgaaggcacttgggaaggatgggaaagataaacca
aaggaagaacgggcaaataaagatgataaggcaagagagatcaaggagaaaacaccaaaa
tctgacaaagagaaggaaaaagtcaagaaagaagaaaaagcttcaaaggaagaaaagtcc
aagacggttgttaccattgttgagtccaagtcaactgcagaaaaggagcgagaaaaggag
ccgtccagagaaagagatgtagcgaaggaaatgaaatccaaggaaaatgctaaaggagga
gaaaagatgccagtagctgggtccttgaagtcacctgttccccgatcagaaacatcagaa
tctgaaagggaacaaaaacgccgcaaagttgatacacattcttctccatcacattcctca
acagtaaaggacaacctcaacgaactcaaggactcttcagcaaagcactacattaaccac
actactccaacactgtccaagagtaaggagagagaagtggacaagaaagatttggacaag
tcaagggaaagatccagagagagagagaagaaagatgaaaaggacaggaaagatcgaaaa
agggatcattcaaacagtgaccgagaggtaccacaggattcaactaaacgacgcaaagag
gaaaatgggacaactggttcttctaagcatagcaaaagtgaaagtccttctgattcccct
cgcttaaatgaaaaggagaaagagaagaacaaatcgaaatcttcaggaaaagagaaaggt
gattcaattaaagcagaaaagatggagaagagctcctctggtagcaaaaaggaatccagg
catgataaagaaaaaacagaaaagaaagaaaaacgagacagtactggagggaaagaagaa
aagaaacatcataaatcttcagacaagcacagataa
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