Phalacrocorax aristotelis (European shag): 142063434
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Entry
142063434 CDS
T11493
Symbol
COL4A6
Name
(RefSeq) collagen alpha-6(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
parx Phalacrocorax aristotelis (European shag)
Pathway
parx04382
Cornified envelope formation
parx04510
Focal adhesion
parx04512
ECM-receptor interaction
parx04518
Integrin signaling
parx04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
parx00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
142063434 (COL4A6)
04518 Integrin signaling
142063434 (COL4A6)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
142063434 (COL4A6)
09142 Cell motility
04820 Cytoskeleton in muscle cells
142063434 (COL4A6)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
142063434 (COL4A6)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
parx04147
]
142063434 (COL4A6)
00536 Glycosaminoglycan binding proteins [BR:
parx00536
]
142063434 (COL4A6)
Exosome [BR:
parx04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
142063434 (COL4A6)
Glycosaminoglycan binding proteins [BR:
parx00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
142063434 (COL4A6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
142063434
NCBI-ProteinID:
XP_074963310
LinkDB
All DBs
Position
11:complement(19921337..20061840)
Genome browser
AA seq
1692 aa
AA seq
DB search
MGRAGVLVLVLLCLGAELASGGGKKSYSGPCGGRDCSAGCKCFPEKGARGRPGPIGLQGP
IGAPGLTGPEGLPGAKGERGAVGPPGPAGQKGDKGPMGVPGFQGINGIPGHPGQPGPRGL
SGLDGCNGTIGSPGFPGSDGFPGLPGPPGHPGPKGLKGEPVFAQASLKGMKGENGLPGLD
GISGPKGLPGPIGSAGPIGLPGLQGPMGPPGPPGPKGNMGLGFQGEKGEKGDVGLPGPPG
PPPSTGILEFMGFPKGKQGEKGEPGPRGFPGDKGLPGMPGFGGVGEKGEKGVPGLPGGRG
LLGGDGFDGIPGRKGHPGTPGYPGLDGVEGMKGELGDIGPPGPPIIIDREGVVISGAPGD
PGNPGIPGPPGEEGISGLPGLPGAPGFPGPERDGMGPGGSPGIPGVKGEVGEPGRATIGL
PGTPGRGGLPGLPGAPGLPGSPRPSFPSETILDGRIGAPGEPGQRGLPGALGPKGYKGEA
GDCACDGGVTRAGPKGISGLPGPSGSPGVPGIKGIGGDPGTVGAPGLRGPPALAGQQGLA
GLKGEKGDSSYATGRGARGDRGATAPRGPSGIPGTPGRDGLPGLPGPPGPPGDGGLGFPG
EKGLPGFPGSKGPRGEPGSPGVGYPGPSGARGPPGDPGIDGFPGQAGLPGPPGITLPCIV
PGAYGPPGTPGFPGLPGPKGIKGFPGIPGQPGLHGSKGQPGSPGIIGLQGEPGFPGPRGE
QGSQGLPGLDGTDGLLGKMGASGLAGMKGAPGDVFGADSGALGERGRPGLPGDKGLTGDL
GFPGSKGLDGRPGLLGIKGEQGNPGYSGAPGLRGPPGPGGPFGIKGRPGPLGPAGLTGAP
GLPGAKGLPGDVGPQGPAGMKGFPGLDGAPGSPGERGFLGPPGPFGQDGRPGFSGPKGEK
GSSGLLGFPGMPGLPGVPGVNGFKGAPGTVGGNGSPGVVGLHGQKGDRGDVGPPGPPILG
LPEQALQFKGDKGDPGLAGLGGFPGPRGDKGIPGSRGQPGLPGPVGSASKEKGLRGEPGF
PGAAGQPGLPGQRGTHGIIGFPGMPGERGSDGIIGTLGYPGSIGLPGPKGDKGEPLGAPG
STGPKGERGDPGFPGERGREGLKGEPGYPGNTGVNGLKGGPGDLGQEGPAGIPGNAGLRG
SPGPPGPPGQPGSVGFPGARGTAGPKGFPGFPGLNGLNGLPGTKGSPGTPGLSEAGLKGP
AGLPGPKGEEGSPGFGRGPLGFPGPKGSSGDVGPPGPVGLPGLPGIPGPSIPSDIPGRPG
DAGHPGADGSSGLPGSPGPRGPPGPAFDQGDTGDPGFHGVLGLQGIKGDVGPTGSVGLPG
ASGFKGIRGEPGLMGMPGKDGPPGDAGYPGLKGEIGHRGLPGQQGAPGITPQLDEITAPA
GLPGLPGIDGVPGFDGDPGFQGPAGKTGTKGLPGRPGLKGRDGLPGPPGTAGDPGPSGPP
GPQGFEGVAGKPGSLGLPGMPGRSVGVGYTLVKHSQSDQIPPCPIGMNKLWDGYSLLYVE
GQEKAHNQDLGFAGSCLPRFSTMPFIYCNINEVCYYASRNDKSYWLSTTAPIPMMPVDSV
QISQYISRCSVCEAPSQAVAVHSQDITIPQCPLGWRSLWIGYSFLMHTAAGAEGGGQSLV
SPGSCLEDFRATPFIECNGARGTCHYFANKYSFWLTTIEQSQQFVSAPPSETLKAGQLRI
RVSRCQVCMKNL
NT seq
5079 nt
NT seq
+upstream
nt +downstream
nt
atggggcgcgcaggggtgctggtgctggtgctcctctgcctgggcgcggagctggcgagt
gggggcggaaagaagtcttacagtgggccatgtgggggccgcgattgcagcgctggatgc
aaatgttttccagagaagggtgcgcggggtcgaccaggaccgattgggcttcaaggacca
ataggtgcacctggacttactggcccagaaggtttaccaggagcaaaaggtgagagagga
gcagtgggcccccctggaccagctggacagaaaggcgacaagggcccaatgggagttcca
ggatttcaaggcatcaacgggatcccaggtcaccctgggcaacctggacctagaggtctg
tctggccttgatggctgcaatggtaccattgggagtcctggctttcctggatcagatggg
tttcctggcctacctgggccacctggtcatcctggcccaaaaggccttaaaggggaacct
gtttttgctcaagccagtcttaaaggaatgaagggagaaaatggtcttcctggattggat
ggaatttctggtccaaaaggtcttccaggtccaataggttctgcaggccctataggatta
ccaggtttgcagggtccaatgggtccccctgggccaccaggtccaaaaggtaacatggga
ttaggctttcaaggagagaaaggagaaaagggtgatgtagggttgcctggccctccaggt
cccccaccatccactggaatactggaattcatgggattcccaaaagggaagcaaggagaa
aagggtgagccaggtcctcgaggattccctggagacaaaggattgcctggcatgccaggc
tttggaggtgttggagaaaaaggagaaaaaggtgtgcctggcttaccgggtggcaggggt
cttttgggaggtgacggatttgatgggattccagggagaaagggtcatccaggtactcca
ggctatccaggactggatggagttgaaggcatgaagggtgaattaggtgacatcggtccc
ccaggccctcctatcattattgacagggaaggtgtagtcatttcaggtgccccaggtgac
cctggaaacccaggaatacctggtcctccaggagaggaagggatcagtggtttaccaggc
cttccaggagctccaggctttccaggcccggagagagatggaatgggccctggagggtct
ccaggtatcccaggtgtgaagggtgaagtgggagaaccaggaagagcaacgattggatta
ccaggcactcctggcagaggtggtttgccgggtctgccaggagcaccaggtttgcctggc
tcaccacgcccttcattcccctcagagacgatcctggatggaaggattggggccccaggg
gagcctggacaaagagggctgccaggagctttgggtccaaaggggtacaaaggagaggca
ggtgattgtgcttgtgatggaggagttacacgagctggtccaaaaggcatctcaggtcta
ccaggtccatcgggaagccctggtgtgcctgggattaagggcattggtggagacccaggc
actgtgggtgcaccaggactgcggggccctccggctttggctggacagcaaggtcttgca
ggccttaagggagaaaaaggggattcatcctatgcaacaggcagaggtgctcgtggggac
cgtggtgcaacagcacccagaggaccttcaggcatcccgggaacccctggcagggatgga
ctcccaggcttgccaggcccaccaggccctccaggtgatggtgggctaggtttcccaggt
gaaaaaggactgccaggatttcctggctccaagggccctcgtggagaacctggttctcct
ggcgttggatatccaggtcctagtggagctcgtgggccgccaggtgacccaggaatagat
ggttttccaggacaagcaggacttccaggccctccaggtatcaccttaccctgcatagtt
cctggagcatatgggcccccagggactcccggctttccaggattgccaggacccaaaggc
atcaaaggctttcctggcattccaggccaacctggattacatgggtcaaaaggacagcca
gggtctccaggaataataggcttgcaaggggaacctggcttccctgggcctcgaggagag
caagggtcacaaggacttccaggactggatggaacagatggtttgcttgggaaaatgggt
gcttcaggcttagctggaatgaaaggagctcctggagatgtatttggtgccgacagtgga
gccctgggagagcgtggccgacctggactcccaggtgataaaggtcttacaggtgatctt
ggattcccagggtcaaaagggttagatggaagaccaggactcctaggtattaaaggcgag
cagggtaacccaggatattcgggtgcccctggattgcggggacctcctggtcctggaggt
ccttttggcattaagggaagaccaggacccttggggccagctggccttacaggagcacca
ggacttcctggagccaaaggcttgcctggggatgtaggtccacaaggccctgctggtatg
aaaggcttcccaggtcttgatggtgctccaggatctcctggggaaagaggattcttaggg
ccacctgggccttttggtcaagatggacgtccaggtttctctggcccaaaaggcgagaaa
gggtcttctggcctgctgggtttccctggcatgccaggcctgcctggtgtccctggggtg
aatgggtttaaaggagctcctggcacagttggaggaaacgggagccctggagttgtggga
ctccacggtcaaaaaggtgacagaggtgatgtaggtccacccggtcctcctattcttggg
cttccagaacaagcgctgcaattcaaaggagacaaaggagatcctggattagctggactt
ggaggattccctggacctagaggtgataaaggaatcccaggaagccgtggacagcctggt
ctccctggtccagttgggtcagcaagcaaagaaaaaggtcttcgtggtgagccaggcttc
cctggtgcagctggacagcctgggctgccaggacagaggggtacacatggtatcatagga
tttccaggaatgccaggagagaggggttcagatggtatcataggaacacttggataccca
ggatctattggtctccctggtccgaagggtgacaagggagagccccttggtgctcctggc
agtactggaccaaaaggagagcgaggagacccagggttcccaggagagagagggagagaa
ggactcaagggtgaaccaggttatccgggaaacactggggtgaatggactcaaaggtggc
ccaggagatcttggccaggaaggaccagcaggaatccctggaaatgctgggctgagagga
agccctgggccaccagggcctccagggcagccaggatctgttggattccctggagctcgt
ggaacagcaggacctaaagggtttcctggatttccgggtttaaatggtctgaatggcttg
ccaggaacgaaagggtctcctggaacaccaggtctgagtgaagctggactgaaaggccct
gcaggtctgccaggtccaaagggtgaagaaggttctccaggcttcggcagaggacctcta
ggattccctggaccaaaaggctcatcaggagacgtgggtccccctggtcctgtgggactg
cctggcttgccaggaatacctggaccttctattccttctgatatacctgggagacctggg
gatgctggccatccaggagctgatgggagttcaggtcttccaggttctccaggaccacga
gggccccctggcccagcttttgaccaaggtgacacaggcgatccaggtttccatggtgtt
cttggcttgcaaggtattaagggtgatgtgggacccactggttcagttggactccctgga
gcatctggattcaaaggtataagaggggagcctggtcttatggggatgccaggtaaagat
gggcctccaggggatgctggttaccctgggctgaaaggtgaaataggccatcgaggtctc
cctggccaacaaggggctccaggtataaccccacagctcgatgaaatcacagcccctgca
ggcttacctggtctgccaggaattgatggtgtccctggctttgatggagatcctggattc
cagggcccagccggaaaaacaggtacaaaaggtctgccaggaagacctggtttgaaagga
cgtgatggtttacctggaccacctggcacagctggggatccaggaccttcgggtccccca
gggccacaaggatttgaaggtgttgctggaaaaccgggctcgcttggtttgccgggaatg
cctggtcggagcgtgggcgttggatacactttagtgaagcacagtcagtcagaccaaatc
ccaccttgtcccataggaatgaataagctctgggacggctacagcttattgtacgtggag
gggcaggaaaaggcacacaaccaggatcttggttttgctggctcatgtttgcctcgcttc
agcaccatgccttttatttactgcaacatcaatgaagtgtgctactatgccagccgaaac
gacaagtcctactggctctccaccactgctcctatccccatgatgccagtggacagtgtt
cagatctcacagtacatcagtcgttgctccgtatgtgaagccccttcccaggcggtggct
gtgcacagccaggacatcaccatcccacagtgtccccttggctggcgcagcctgtggata
ggatactccttccttatgcatactgcggctggtgcagaaggtggaggtcagtcccttgtc
tcacctggttcttgcctggaggatttccgtgctactccctttattgaatgcaacggtgcg
aggggaacgtgccattactttgcaaacaagtacagcttctggctgacgaccatcgagcag
tcgcagcagtttgtcagtgcgcctccctcagaaacgctgaaagccgggcagcttcgaata
agggtcagccgctgccaagtgtgcatgaagaacttgtag
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