Phalacrocorax aristotelis (European shag): 142063606
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Entry
142063606 CDS
T11493
Symbol
COL17A1
Name
(RefSeq) collagen alpha-1(XVII) chain
KO
K07603
collagen type XVII alpha
Organism
parx Phalacrocorax aristotelis (European shag)
Pathway
parx04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
parx00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
142063606 (COL17A1)
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
DUF5006
DUF4869
Motif
Other DBs
NCBI-GeneID:
142063606
NCBI-ProteinID:
XP_074963628
LinkDB
All DBs
Position
12:complement(9815083..9860985)
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AA seq
1518 aa
AA seq
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MDSVTKKTRQDGSEVTERLITETVTTRLTSLPPKGGSSSGLKTSSHTGGSGVEKRSYTHS
SSYVTSSGSGRLNSSTSSSGYRQTQSPSSTLTKSPGSTFERKTYVSRHATYEGSSSANSS
PEFPRKEFASASTRGRSQSRESEIRVRLQSASPSGRWTELDDVKRLLKGSRSASCSPTRS
PSSTLPIPKKAVVETKMVTESSQSVSGTYDTTILNTALPSYMWSSTLPAGSSVGGYQNSS
SLINAMSHSTGSVFGVPNNLAPSNHTLNAGLSTSSTVFGVQNNLSPSSSTLTQNATAASA
AYGMKNTSQSNTMASTGVSASAGGTVLSSQGDDILRKDCKFLLLEKENAPAKKEMELLIM
TKDSGKVFSASTTGLNGGSFVEDTLKKEKQGLSSSITTDSGLKSDANGGLKSVPTRDKAT
YAEIRNGDVVGPIGSAPSWCPCGSCCSWWKWLLGLLLAWLLLLGLLFGLIALAEEVRKLK
SRVDNLEKINNGLMTINEGNSKIEKDVSRVDFLHGISSSSTFPYENEESVWLMVKSRLNK
EIERGYFRGERGEPGAKGDMGMQGLRGERGLPGVPGIPGPIGHQGPEGPKGQKGSMGEPG
VEGPMGQRGREGLPGPRGEPGPPGFGEKGDRGVVGEPGPPGPPGPPGSAGLKGLTGSPGP
QGPPGPPGLQGFRGEAGLPGPKGEKGATGAPGPKGDQGEKGSRGMTGEQGSRGMPGPPGE
PGAKGPVGQAGRDGQPGKKGEPGFMGMQGARGPPGPSGDAGQPGLTGPQGPPGLPGNPGR
PGAKGEPGAPGKVISAEGSSTIALPGPPGPPGPAGPAGPPGVPGPVGPAGLPGQQGPRGE
KGSPGEAVIETIKTEVSSLTSQMLADLQGRAGPPGPPGPPGESVQGPPGPRGPPGEGLPG
PPGPPGRPGSSMSTSETFLTGPPGPPGPPGPKGDQGERGPRGFTGEPGEPGLSAFSSHGE
RITIQGPPGVPGPPGPPGPKGDAGVPGAPGIPAASRGGSRQIQGPPGPPGPPGPPGPGGS
SSQEIQQYVTDYLKSDSIRHYLTGAQGPPGPPGPPGIITTADGMSLDYAELATRVMNYMT
SSSDRYQSFASSVSTTSVLYQELLDMLQREEIRQYLTGPQGPPGPPGPGGDGMSLSLDYD
ELTRRFISYLTNSGMSIGLPGPPGPPGTPGISYGDLTAYLQNSEFSGLVGPPGPAGPPGP
PGIPGSSGISLEDISAYLQSVGYSSLSGVQGPPGPPGPPGPPGFSGTGLLSYGDITHSDE
FRSELIQYLKSDEVRSYISGPPGPPGPRGPPGPKGDSGLVAGSMSSSYHGLQTSERLHGG
SFGAEGSHEGSLGTGSSYSSSMSSMSSYSASAGSDGSYDAAMGSDGSFDALLTEEGSHRR
AASSSRSYSNSFTGSLDYNELARHVSESLQSQGILQDLMSYTVQGPAGPPGPPGPPGISR
VFAAYGNVTEDLMDFFRTYGTIQGPPGEKGERGYPGPKGDPGPMGPPGRHGQRGPKGEKG
EKGEQVYVGRRKRRSVGV
NT seq
4557 nt
NT seq
+upstream
nt +downstream
nt
atggattctgtaacaaagaaaacgaggcaagacggatcagaagttactgaaagacttatt
acagagactgtaaccacaagactgacgtccttaccacccaaaggaggaagcagcagtggc
ctcaaaacatcatcccacactggagggagtggagtggaaaagaggtcttacacccatagc
agcagctacgtgacttcaagtggaagtggtagactgaattcatcaacatcatcatctggc
tacaggcaaacccagtctcccagctctactctcaccaaatcacctggctcaacatttgaa
agaaaaacctatgtcagccgccatgcaacatatgaagggagctccagtgccaactcttct
cctgagttccccagaaaagaatttgcatctgcctccacaagagggagaagccaaagtcga
gagagtgaaataagagtccgactgcagagcgcatctccctctggcagatggacggagctg
gatgatgtgaaacgtttgctgaaaggaagtcgatcagccagctgcagccctactcgatcg
ccatcaagtacgctcccgataccaaaaaaggctgtggtggagacaaagatggttactgag
agctctcagtcagtgtcggggacatatgatacaaccatactgaatactgccctcccttca
tacatgtggtcctccactctgcctgctgggtcttctgttggtggataccagaacagctct
tccttgatcaatgctatgtctcactctacgggatcagtttttggtgttccaaataacctg
gctcccagcaatcatactctgaacgcaggcctgagcacttcctctacagtgtttggcgtt
caaaacaacctgtctccaagctcttcaaccctgacccagaatgctactgcagcctccgca
gcatatgggatgaagaacacttctcagagcaacaccatggcaagtactggtgtgtctgcc
tcagcagggggaactgttctgagctcccagggagatgacattctgcgcaaagactgcaag
ttcctgctgctggagaaggagaatgccccagcaaagaaggagatggagctcttgatcatg
acaaaagatagtggcaaagtctttagtgcctcaaccactgggcttaatggaggatccttt
gtagaagacaccttgaagaaagagaagcagggactttcatcctccatcactacagattct
ggcctaaaatcagatgcaaatggaggattgaaatctgtgccaacaagggacaaagcaact
tacgcagaaatacgaaatggtgacgtggtgggtccaattggatcagcaccatcctggtgt
ccctgcggttcctgctgtagctggtggaaatggctcctgggtttgcttctggcctggttg
cttcttcttggattgctttttggactcattgctctggcggaagaagtgagaaagctgaaa
tctcgtgtggataacctggaaaaaatcaataatggcctcatgacaattaatgaagggaat
tcaaaaatagaaaaggatgtttcaagagtagactttcttcatggtatttcatcctcctca
accttcccttatgaaaatgaagagtcagtttggttgatggtgaagagcagactgaacaag
gaaatagaacgaggctacttccgaggggagagaggagaacctggtgcaaaaggtgacatg
ggaatgcaaggtctcagaggagagcgaggacttccgggtgtcccaggcattcctggtcca
attgggcaccaaggaccagaaggaccaaaaggacagaaaggcagcatgggtgaacctggt
gtggaaggtcccatgggtcaaagaggtcgtgaaggtctaccagggcctcgaggggagcct
ggaccacctggatttggagaaaaaggagacagaggtgttgttggtgagccaggtcctcca
gggccacctggtcccccgggttctgctggccttaaaggtctgacgggttctccaggccca
cagggtcctccaggtcctcctggcctacaaggatttagaggagaagcaggtcttccaggg
cctaaaggtgagaaaggagccactggagcccctggacccaaaggtgatcagggtgagaag
ggttctcgtggaatgacaggtgaacaaggctcaagaggaatgcctggtcctccaggagag
ccaggagctaaaggacctgtaggacaagctggccgtgatggacagcctggtaaaaaaggt
gaaccaggttttatgggaatgcaaggagcccgaggccctccaggaccctctggagatgca
ggacagccaggtctcacaggaccccaaggacctccaggacttccaggcaacccagggcga
ccgggggctaaaggagaacctggcgctccaggaaaagtcataagtgctgagggttcatca
actattgctctgccaggcccaccaggtcccccaggcccagctggccctgctggaccccca
ggtgttccaggtcctgttggaccagctggtctccctgggcagcaaggtccgcggggtgag
aagggatcccctggtgaagctgtgatagaaactataaaaacagaagtctcatcattgaca
tctcaaatgctggcagatttacaagggcgagcagggccaccaggtccccctggaccacca
ggtgaatctgtgcagggaccccctggacctcgtggccccccaggagaaggattgccagga
cctccaggcccaccaggcagaccaggatcttccatgtccacctcagaaacattcctcaca
ggcccaccaggtccaccaggcccaccaggcccgaagggagaccaaggcgaacgaggtcca
cgaggattcacgggagaaccaggagagcctggcctttcagcattctcctcccatggtgaa
agaatcaccatccagggacctccaggagttccaggcccaccaggcccacctggacccaaa
ggtgatgcaggtgtcccaggcgctcctggcatcccagcagcatctcgaggtggatccaga
caaattcagggacccccaggacctcctgggccacccggtcctcctggcccaggtggaagt
tcatctcaagagattcagcagtatgtcactgactacctgaaaagtgacagcataaggcat
tatttgactggtgcccaaggccctccaggccctccaggcccacctggaatcatcaccact
gcggatgggatgagcttggattatgcagagctggctacccgtgttatgaactatatgaca
agctcttcagatcgctatcagtcatttgccagttcggtatcaactacatccgttttgtac
caagaacttctggatatgcttcagagagaagaaattcgtcagtatctgactggacctcag
ggcccaccaggacctcctggaccagggggagatggcatgtctctgtcactggattatgat
gagctgaccagacggtttatcagctacttgacaaattctggaatgagcattgggctccct
ggaccacctgggcctccagggacacctggtatatcttacggtgacctgacagcatacctg
caaaactctgaattcagtggtcttgttgggccccctggtcctgcagggcccccaggacct
ccagggatccccggatcatctggcatctctctagaggacatctctgcttacctacaaagt
gtgggatactcctccctctctggagtccaaggtccacccggccctcctggccctccagga
ccacctggcttctcaggaaccggcctcctgtcctatggtgacattacccacagtgacgag
ttcaggagcgagctgatccagtacctgaagagtgatgaagttcgaagctacatctcaggg
ccgcctgggccccctgggccacgaggaccaccaggacccaaaggagacagtggcttggtg
gctgggtctatgtcgtcatcataccatgggttacagacttccgagcgcttgcacggagga
tcttttggtgctgagggatcccatgagggatcactgggcacaggcagctcatacagcagc
tccatgagcagcatgtcatcttacagtgcctcagctggcagcgatggctcttatgatgcc
gccatgggcagtgatgggtctttcgatgcattgctaacagaggagggatcacacaggaga
gcagccagttcaagcagatcctacagcaactccttcactggttccctggattacaatgag
ctggcacgccacgtgtcagagagcctacagagccaaggtattctccaggacctgatgtct
tacactgtacagggacccgcaggtcccccaggccctcctggtccccctggcatcagcagg
gtgtttgcagcctatggcaatgtcaccgaggacctcatggacttctttagaacatatggt
accatccaggggccacccggtgaaaagggggagaggggttatcctggacccaaaggcgac
cctggaccgatgggcccaccaggacgccatgggcagaggggaccaaagggagagaaagga
gagaaaggtgaacaagtgtatgttggcagaagaaaacgaagaagtgttggggtttaa
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