KEGG   Phalacrocorax aristotelis (European shag): 142064233
Entry
142064233         CDS       T11493                                 
Symbol
CSTF1
Name
(RefSeq) cleavage stimulation factor subunit 1 isoform X1
  KO
K14406  cleavage stimulation factor subunit 1
Organism
parx  Phalacrocorax aristotelis (European shag)
Pathway
parx03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:parx00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    142064233 (CSTF1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:parx03019]
    142064233 (CSTF1)
Messenger RNA biogenesis [BR:parx03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     142064233 (CSTF1)
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz WDR55 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_TEP1_2nd CSTF1_dimer WD40_Gbeta Beta-prop_CAF1B_HIR1 EIF3I Beta-prop_EML Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR36-Utp21_1st ANAPC4_WD40 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_RIG_2nd NBCH_WD40 Beta-prop_TEP1_C Beta-prop_WDR75_1st Beta-prop_VPS8 Beta-prop_EIPR1 Beta-prop_DCAF4 WDR90_beta-prop_4th Beta-prop_Aladin Beta-prop_IFT122_1st Beta-prop_DCAF12 Beta-prop_IFT140_1st Beta-prop_NWD2_C Beta-prop_NUP159_NUP214 PROPPIN VPS8_N Beta-prop_WDR11_1st Beta-prop_WDR75_2nd Frtz Beta-prop_HPS5
Other DBs
NCBI-GeneID: 142064233
NCBI-ProteinID: XP_074965004
LinkDB
Position
13:complement(15698260..15707599)
AA seq 537 aa
MSGRRVAAACDRRQLPRGMGSMASPLLDPRPLRLPFLEADSRLQSICGRSMQQPSRRSIL
RSRPPPPPPPLPPPPIDALRAPVAILGGERGRQKEGSAPPRHSLLTMYRTKVSLKDRQQL
YKLIISQLLYDGYINIANGLINEIKPQSVCAPSEQLLHLIKLGMENDDSAVQYAIGRSDT
VAPGTGIDLEFDADVQTMSPEASEYETCYVTSHKGPCRVATYSRDGQLIATGSADASIKI
LDTERMLAKSAMPIEVMMNETAQQNMENHPVIRTLYDHVDEVTCLAFHPTEQILASGSRD
YTLKLFDYSKPSAKRAFKYIQEAEMLRSISFHPSGDFILVGTQHPTLRLYDINTFQCFVS
CNPQDQHTDAICSVNYNASANMYVTGSKDGCIKLWDGVSNRCITTFEKAHDGAEVCSAIF
SKNSKYILSSGKDSVAKLWEISTGRTLVKYTGAGLSGRQVHRTQAVFNHTEDYVLLPDER
TISLCCWDSRTAERRNLLSLGHNSIVRCIVHSPTNPGFMTCSDDYRARFWYRRSTTD
NT seq 1614 nt   +upstreamnt  +downstreamnt
atgtcgggtcgtcgtgtcgctgcggcatgtgatagacggcagctaccacggggcatgggt
agcatggcatcgccgctccttgacccgcgtccacttcggctgccgtttctcgaggctgac
agtcgcctccaatcgatctgcgggcgctcgatgcagcagccttcgcggaggagcattctg
cggtcccggccgccgccgccgcctcctcccctgccgccgccgccgatcgatgcgctcagg
gctccggtcgccattttagggggagagcgagggaggcagaaggaagggtcggcccctccg
aggcattccttgctcacaatgtatagaacgaaagtcagtttgaaagaccgccagcaactt
tataaactgataattagtcagctgctgtacgatggatacataaatattgccaatggcctg
ataaatgagataaaaccgcaatcagtctgtgcaccgtctgaacaactgctgcacctaatt
aagttaggaatggagaacgatgacagtgctgttcaatatgcaattggacggtcagatacg
gtagctccaggcacaggaattgacttggaatttgatgcagatgtacagaccatgtctcct
gaggcttccgaatatgagacttgttatgtcacatctcataaaggaccgtgtcgcgtagcg
acgtatagcagagacggacagttaatagctacaggatctgctgatgcctcaataaaaatt
cttgatacagagagaatgttggccaaaagtgctatgcctattgaggtcatgatgaatgag
acagcacagcaaaacatggaaaatcaccctgttattcggactctgtatgatcatgtggat
gaagttacgtgtttagcttttcatccaacagaacagatcctagcatctggttcaagggac
tacacacttaaattgtttgattattcaaaaccttctgccaaaagagccttcaaatatatc
caggaagcagagatgttgcgctcaatttcttttcacccttctggagatttcatacttgtt
ggcacccagcaccctactttacgactgtacgatatcaatactttccagtgttttgtgtct
tgcaatcctcaagatcagcacactgatgctatatgttcagtaaattacaacgcaagcgca
aacatgtatgtgacgggaagcaaggacggatgcatcaaactgtgggatggtgtttcaaat
cgctgtattactacttttgagaaggcacatgatggagctgaagtctgttctgctattttt
tccaaaaattcaaagtatatcttgtcaagtggaaaagactctgtagctaaactgtgggag
atatccaccggtcgcacgctggtcaaatacacaggagctggtctgagcggacggcaagta
cacaggacgcaagctgtcttcaaccacacagaagactatgtgctgcttccagatgaaagg
accataagcctctgctgctgggattcaagaactgctgaacggagaaaccttctttctctg
gggcacaacagcattgtccgctgcattgtccattccccaaccaatcctggcttcatgacc
tgcagcgacgactaccgggctaggttttggtacagaaggtcaacgacggactaa

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