KEGG   Phalacrocorax aristotelis (European shag): 142065488
Entry
142065488         CDS       T11493                                 
Symbol
CPSF4L
Name
(RefSeq) putative cleavage and polyadenylation specificity factor subunit 4-like protein
  KO
K14404  cleavage and polyadenylation specificity factor subunit 4
Organism
parx  Phalacrocorax aristotelis (European shag)
Pathway
parx03015  mRNA surveillance pathway
parx05164  Influenza A
Brite
KEGG Orthology (KO) [BR:parx00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    142065488 (CPSF4L)
 09160 Human Diseases
  09172 Infectious disease: viral
   05164 Influenza A
    142065488 (CPSF4L)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:parx03021]
    142065488 (CPSF4L)
   03019 Messenger RNA biogenesis [BR:parx03019]
    142065488 (CPSF4L)
Transcription machinery [BR:parx03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     142065488 (CPSF4L)
Messenger RNA biogenesis [BR:parx03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     142065488 (CPSF4L)
SSDB
Motif
Pfam: zf-CCCH zf_CCCH_4 zf-CCCH_2 Torus zf-CCCH_12 zf-CCCH_4 zf-CCCH_3 zf-CCCH_RBM22 zf-CCCH_DUS3L zf-CCCH_PARP12 zf-C3H1 Nab2-like_zf-CCCH_ zf-CCCH_11
Other DBs
NCBI-GeneID: 142065488
NCBI-ProteinID: XP_074967783
LinkDB
Position
16:6772262..6774880
AA seq 173 aa
MQELVAGVEKIRFDLESDVEQQRGAQPLPFPRMDSVRCPFRHGGEKMVVCKHWLRGLCKK
GDECDFLHEYDVTKMPECYFYSKFGECSNKDCPFLHIGATTSTVACPWYDRGFCRHGPLC
KYKHTRRVLCANYLVGFCPEGPKCKFMHLKAGLMTSSMDPSKVMQGMSFAIPS
NT seq 522 nt   +upstreamnt  +downstreamnt
atgcaggagctcgtggctggtgtggagaagatcaggtttgacttggagtctgatgtggag
cagcagcgaggagctcagcccctgcccttcccgcgtatggacagcgtgcggtgccccttc
cggcacggtggggagaagatggtggtgtgcaagcactggctgcgtgggctctgcaagaag
ggtgatgagtgtgacttcctgcacgagtacgatgtgaccaagatgccagagtgctatttc
tactccaagtttggtgagtgcagcaacaaggactgtcccttcctgcacattggtgccacc
accagcaccgtggcctgtccctggtacgaccgcggtttctgcaggcacggtcccctgtgc
aagtacaagcacacgcggagggtgctgtgtgccaactacctcgttggcttctgcccagaa
ggacccaagtgcaaattcatgcacctcaaggccgggctgatgacgagcagcatggatcca
tccaaggtgatgcagggaatgtcctttgccattccctcttga

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