Phalacrocorax aristotelis (European shag): 142065876
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Entry
142065876 CDS
T11493
Symbol
NUP188
Name
(RefSeq) nucleoporin NUP188
KO
K14311
nuclear pore complex protein Nup188
Organism
parx Phalacrocorax aristotelis (European shag)
Pathway
parx03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
parx00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
142065876 (NUP188)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
parx03019
]
142065876 (NUP188)
Messenger RNA biogenesis [BR:
parx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
142065876 (NUP188)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup188_N-subdom_III
Nup188_N
Nup188_SH3-like
Motif
Other DBs
NCBI-GeneID:
142065876
NCBI-ProteinID:
XP_074968739
LinkDB
All DBs
Position
17:6631367..6660490
Genome browser
AA seq
1737 aa
AA seq
DB search
MAAGGLCARSGRELWTILLGRSALREPAQIAAELNKHWQRLLEGLSYYKPPSTTSAEKIK
ADKDVAAPMKELGLRVSKFLGLDEEQSVQLLQCYLQEDYRGTRDSLKTVLQDERQSQALM
LKLADYYYEERICILRCVLHLLTYFQDERHPYTAQYFQCVEKLDKELVPNYRKQFEALYK
AEAPTWETHGNLMTERQVSRWFVQCLREQSMLLEVIFLYYAYFEMAPDELLAFAKMFKEQ
GFGTRQTNRHLVDESMDHLVDRIGYFSALILVEGMEIDSLHERALDDRTEEHKLANNDRI
HQEMDSQLLQLGDVSHHALVLLAWALLRHTVNPEESTNIIRRMGSTAIQLNVFQYLTKLL
RSLSSGGKNCTASTACMCIYGLLSFVLTSLELHTLGNQQDIIDAACEVLAASSIPQLFWK
TEPTAGLGIILDSVCGMFPHLLTPLLQLLQALVSDKSTAKKVYSFLDKMSFYIELYKHKP
PDVISHEDGTLWRRQAPKLLYPLGLGQTNLRIPQGTVGQVMLDDRAYLVRWEYSYSSWTL
FTCEIEMLLHVVSTADVIQHCQRVKPIIDLVHKVISTDVSIADCLLPITSRIYMLLQRLT
TVISPPVDVIASCVNCLTVLAARMPAKVWTDLHHTGFLPFVANPVSSMNHMISAEGMNAG
GYGNLLMSIEQPQGEYSVTISFLNLITTLVRGQLGSTQSQGLVPCIVFVLKEMLPNYHKW
RYNSHGVREKIGCLILQLIHAILNLCPEMDPRSSNAPSLQSLCIFSLANTEAGQAVINIM
GIGVDTIDMVMASQSSSDESQGQGQLLIQTVKLAFSVTNNVIRLKPPSSVVSPLEQALTQ
HGAHGNNLIAVLAKYIYHKHDPALPRLAIQLLKRLATVAPMSVYACLGSDAAAIRDAFLT
RLQSKIEDMRIKVMILEFLTVAVETQPGLIELFLNLEVKDGSDGSKEFSLGEWSCLQVVL
ELIDSKQQERYWCPPLLHRAAIAFLHALWQDRRDSAMLVLRTKPKFWENLTNPLFGTLPP
PSESSELSVLDTCALIMKIICLEIYYVVKGSLDQSLKDTLKNFSTKKRFAYWSEYVKLLA
YHVAETEGSSCASMTEYQMLISAWRMLLIISTSHADIMHLTDSAVHQQLFLDVLNGTKVL
LLVPMSVSCLQLGSMLCTLLLILLKQWKSELGSVDKIINSLTQILEGVLQADQQMMEKTK
AKVFSALITVLQMKEMKVNEIPQYSQLVLSVCETLQDEVIALFDQTRHSLTLGDATDDKD
SMETDDASRVKHKDQRDGVCVLGLHLAKELCEVDEDGDYWLQITRKVPVLPTIFAALEIS
LRVKQNLHFTEASLHLLLTLARTQQGAAAVAGAGVTQSVCLPLLSVYQLSTNGAIQTSAS
SRKSLDAPSWPGVYRLSMSLMERLLKTLRYNFLTEALDFVGVHQERILQCLNAVRTVQSL
ACLEEADHTVGFILQLSNFTKEWHFHLPQLMRDMQVNLCYLCQACTSLLHSRKMLQHYLQ
TKNGDSLPSSVTPRVQRNPQASSKHPSPESEAAEQKALLTVQYSLLKILSKSLAALRHFT
PDVCQILLDQSLDLAEYNLLFVLSFTTPAFDSDVAPSFGTLLATVNVALNMLGELDKKKE
PFPQAAGLNMQEGTKTLKSLLMFTMENCFYLLISQAVRYLRDPAVHPRDKQRMKQELSSE
LSTLLSSLSRYFRRGGPSSPASGVLPSPQGKSASKLGPEGQEPLFQLVQAFVRHVQR
NT seq
5214 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgggcgggctgtgcgcgaggagcggcagagaattgtggacaattcttctgggc
agatcagctttaagggaaccagcacagattgcggcagagttgaacaagcactggcaaaga
ttattagagggactttcatactataaaccgccaagtacgacttctgcagaaaaaataaaa
gctgataaagatgtagctgctccaatgaaagagttgggtctgagggtcagcaagtttttg
gggctggatgaagagcagagtgtgcagttgttacagtgttatcttcaagaggattacaga
ggaacaagggactccctgaagacagttcttcaggatgaaaggcagagtcaggctctgatg
cttaagcttgctgactattactatgaagagaggatctgcattctgcgctgtgtcctccat
ctacttacttattttcaggacgagaggcacccttacacagcacaatacttccagtgtgtt
gaaaagttggacaaggaactagttcctaattaccggaaacagtttgaagcactgtacaaa
gcagaagctcctacatgggaaacacatggaaatctcatgacagaacgtcaagtttcccgt
tggtttgtgcaatgtctccgtgaacagtccatgctcctggaagtcatcttcctctactat
gcatactttgaaatggcgcctgatgagcttctggcatttgcaaagatgttcaaagaacag
ggatttggcactagacaaaccaacagacatttggtagatgagagcatggatcacctggta
gatcgtattggctactttagtgctcttattctggtagagggcatggaaatagattccctc
catgagcgtgctttggatgacaggacagaggagcacaagttagccaataatgaccgcatc
caccaggagatggacagtcagttgttgcagttaggggatgtctcacatcatgctctggtc
cttctggcctgggctctgctccgtcacactgtaaatccagaggagtcaacaaacattatc
aggagaatgggcagcactgctatccagctgaatgttttccagtatctgacaaagcttctg
cgatcgctgagcagtggggggaagaattgtactgccagcacagcttgtatgtgtatttat
ggacttctttcctttgtcctgacatcactggaattacatacattgggcaatcagcaggat
ataattgatgctgcatgtgaagttctggcagcttccagcattcctcagctcttctggaag
acggaacctactgcgggtctgggtattatcctggacagtgtgtgtgggatgttcccccat
cttcttactcctctccttcagctgctccaagcccttgtgtctgataaatctactgcaaaa
aaggtatacagtttcctggataaaatgtcgttctatatcgaactgtacaagcataaacct
cctgatgtgatctctcatgaagatggcacactttggcgaagacaggccccaaagctcctc
tatccacttggactaggtcaaacaaatctgcggatacctcagggaacagtgggccaagtg
atgctggacgatcgggcttatttggtacggtgggagtattcctacagcagctggacactg
tttacctgtgagattgagatgctgctccatgtcgtatcaacagcagatgtgattcagcat
tgccagagggtcaagccaataattgatctggttcataaagtcatcagcactgatgtatca
atagcagattgccttctgccaatcacgtcacgaatctacatgctcctgcagaggctaaca
actgtaatctctccccctgtggatgttattgcttcctgtgtcaattgtttgacagtactg
gctgctcggatgccagccaaggtttggactgaccttcaccatacagggttcttaccattt
gttgccaatccagtgtccagtatgaatcacatgattagtgcagagggaatgaatgctggg
ggctatggaaacctattgatgagcatagaacagcctcaaggcgagtacagtgttaccatc
tccttcctgaacctgatcacgactctagtccggggacagcttggtagcacgcagagccaa
ggacttgtgccttgcattgtgtttgtcctgaaggagatgttaccaaattaccacaaatgg
cgttataactctcatggagtaagagagaaaattggatgccttattctgcagttgatccat
gctatactgaatttgtgccctgaaatggatcctcgcagcagcaatgcccccagccttcag
tccttgtgcatcttcagcctggccaacactgaagcagggcaggctgtcattaacatcatg
ggaattggtgtggacactattgatatggtaatggcctcccagtctagcagtgatgagtca
caaggccaaggtcaactgctgatccaaacagttaagctggcattctcggttaccaataat
gtcatccggttgaaacctccctctagtgtggtatctccattagaacaggcacttactcag
catggtgctcatggaaacaatcttattgcggtcttggccaaatacatttaccacaagcat
gaccctgcacttccacgcctggccatccaattgctcaaacgactggctacggttgctccc
atgtctgtttatgcctgccttggtagtgatgctgctgccatccgtgatgccttcctcacc
cgcctgcagagcaagattgaggacatgcgtattaaggtcatgatactggagttcctcaca
gttgcggtggagacacaacctgggctcattgagctgttcctgaacttggaagtgaaagac
ggcagcgacgggtcaaaggaattcagcttaggggagtggagttgcctccaagtagtctta
gagctgatagactccaaacaacaggagaggtactggtgccctcccctcttgcatcgtgct
gccattgccttcctgcatgctctgtggcaggaccgtcgagacagcgccatgctagttcta
aggacaaagccaaagttctgggaaaatttaaccaatcccctctttgggacccttcctccg
ccttcagaatcgtcagagctcagtgtcttggatacctgtgccttaatcatgaaaatcatc
tgtttggagatctactatgttgtcaagggctcactggatcagtccctgaaagacacgctg
aagaatttctccaccaaaaagcgctttgcctattggtcagaatatgtgaagttactggcg
tatcatgtggcagagacagagggtagcagctgtgcctccatgacagaatatcaaatgctg
atctcagcctggcggatgctgctgataatctctactagccatgcagatataatgcacctg
actgattctgcagttcatcagcaattgtttctggatgtgctaaatgggaccaaggttttg
cttctagttcccatgtcagtatcctgtctgcagctggggtctatgctatgtacccttctt
ctgatcctgctgaaacagtggaagagcgagttgggttctgtggataaaatcataaactcc
ttgacgcagattctggagggagtactacaggcagatcagcagatgatggagaaaaccaaa
gccaaagtgttctcagctcttatcactgtgctgcaaatgaaggagatgaaagtgaatgag
atcccacagtactcccagctggtgttgagcgtgtgtgaaacactccaagatgaggtaatt
gcactctttgatcagactcgacacagcctgaccttgggagatgctacagatgacaaggac
agcatggaaacagatgatgcctcccgagttaaacacaaggaccagcgagatggggtgtgt
gttttgggtctgcatctggctaaagagctctgtgaagttgatgaagatggagactactgg
ctacagattactaggaaagtccctgtgcttcctactatctttgccgcattggagatcagc
ttgagagttaaacaaaaccttcacttcacagaggcctcattacatttactgctgacctta
gcaaggactcagcagggagcagcagcagtggctggagctggtgtcacacagagtgtctgc
ttgcccctcttgagtgtgtaccagctcagcactaatggcgccatccagacatctgcttct
tctcgaaagtctctggatgccccgtcttggcctggagtctatcgtctctccatgtcactg
atggaacgccttcttaaaacacttagatacaacttcctgacggaagcattagactttgtt
ggtgtccatcaagagaggattcttcagtgcctgaatgcagtacggacagtacagagcttg
gcctgtctggaagaggctgatcacactgttggcttcattcttcagctctcaaatttcaca
aaggagtggcatttccacttgccacagctaatgagggacatgcaggtgaacctgtgttat
ctgtgtcaggcctgtacctccctcctgcacagccgcaaaatgctccagcactacctgcag
acaaaaaatggtgattcccttccatcaagtgtgactccacgagtgcagcgtaatcctcag
gcctcctccaaacatcccagccctgagtcagaggcagcagagcagaaagcactgcttaca
gtgcagtacagcctcttgaaaatcctcagcaaatctcttgctgccctgcgccatttcacc
cctgatgtctgccagatcctccttgatcagtcactggaccttgctgagtacaacttgctc
tttgttttgagtttcaccacaccagcctttgattcagatgtcgcaccttcctttgggacc
ctccttgccacagtcaacgtggcccttaacatgttgggagagctggataagaagaaggaa
cctttccctcaggctgcagggctaaatatgcaagagggaaccaaaaccctcaagtctctg
ctcatgtttacaatggaaaactgtttctacctgctcatctcccaggctgttcggtacttg
agagacccagccgtgcacccccgtgataagcagcggatgaaacaggagctcagttctgag
ctgagtacactgctctccagcctgtctcgttacttccgccgtggtggtccttcttcacct
gccagcggggttcttccctctccccaaggaaagtctgcttccaagctgggtcctgagggg
caggagcctttgtttcagctcgtgcaggcctttgtccggcacgtgcagagatag
DBGET
integrated database retrieval system
