Phalacrocorax aristotelis (European shag): 142066347
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Entry
142066347 CDS
T11493
Name
(RefSeq) ATP-dependent RNA helicase DDX19B
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
parx Phalacrocorax aristotelis (European shag)
Pathway
parx03013
Nucleocytoplasmic transport
parx03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
parx00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
142066347
03015 mRNA surveillance pathway
142066347
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
parx03019
]
142066347
Enzymes [BR:
parx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
142066347
Messenger RNA biogenesis [BR:
parx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
142066347
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
142066347
NCBI-ProteinID:
XP_074969762
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Position
19:complement(2521844..2535116)
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AA seq
479 aa
AA seq
DB search
MATDSWALAVDEQEAAAESLSSLHLKEEKTKPDANGAVVKADDNAEKTEDEEKEDRAAQS
LLNKLIRSNLVDTTNQVEVLQRDPTSPLYSVKSFEELRLKPQLLQGVYAMGFNRPSKIQE
NALPMMLAEPPQNLIAQSQSGTGKTAAFVLAMLSRVEPGNKYPQCLCLSPTYELALQTGK
VIEQMGKFYPELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFV
LDEADVMIATQGHQDQSIRIQRMLPRDCQMLLFSATFEDSVWKFAQKVVPDPNIIKLKRE
EETLDTIKQYYVLCNNRDEKFQALCNIYGAITIAQAMIFCHTRKTASWLAAELSKEGHQV
ALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDN
ETYLHRIGRTGRFGKRGLAINMVDSKHSMNILNRIQEHFNKKINKLDTDDLDEIEKITN
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
atggccaccgactcctgggccctggccgtggacgagcaggaggcggcggccgagtcgttg
agcagtttacacctgaaggaggaaaaaaccaaaccagatgccaatggtgctgttgtcaag
gcggatgacaatgcagagaagacggaggatgaggagaaggaggacagagctgctcagtcc
ttgctgaacaagctaattcgcagtaacttagttgacacaacgaaccaagtggaggtgctg
cagagggatcccacgtcgcctctctactccgtgaagtcttttgaggaactgcgactgaaa
ccacagctcctgcaaggagtctatgccatgggcttcaacagaccgtctaagatacaagag
aatgccctgcccatgatgcttgctgaacccccacagaacttgatcgcacaatctcagtcc
ggtacaggcaagacggctgcctttgtcctggccatgctcagtcgtgtggaacctgggaac
aaatatccacagtgcttgtgcctttccccaacgtacgagctggcgcttcaaacaggaaaa
gtgattgaacaaatgggaaagttttatccggagctgaaacttgcctatgctgtccgaggc
aataaactggagaggggtcagaagatctccgagcagatcgtaatcggcacgccgggcacc
gtcctggactggtgttccaaactgaagttcatagatcccaagaaaatcaaagtgtttgtc
ttggatgaggctgacgtgatgattgcaacccagggccatcaggaccagagcatccgcatt
cagagaatgctccccagggactgccagatgcttctgttttcagccacttttgaggattct
gtgtggaagtttgctcaaaaagttgttcctgacccaaacatcatcaaactgaagcgagag
gaggagacgctggacactattaagcagtattacgttctgtgcaataacagagatgagaag
ttccaggctctctgtaatatctacggcgctatcaccattgcccaggccatgatcttctgc
catactcggaagacggccagctggctggcggcagagctctcaaaggaaggccatcaggtg
gcattgctcagcggggagatgatggtggaacagagagccgcggtgatagagcgtttccga
gagggcaaagaaaaggtgctggtgaccacaaacgtctgtgccagagggatcgatgtagag
caggtctctgttgttatcaattttgaccttcctgtggataaggatggaaatccagataat
gagacttacctgcaccggatcggacgtacaggtcgctttggcaagcgaggactggctatt
aacatggtggacagcaagcacagcatgaatattctcaacagaatccaggaacatttcaac
aaaaagataaacaaattggatactgacgacttggatgaaattgagaagataactaactga
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