Phalacrocorax aristotelis (European shag): 142066959
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Entry
142066959 CDS
T11493
Symbol
HDAC1
Name
(RefSeq) histone deacetylase 1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
parx Phalacrocorax aristotelis (European shag)
Pathway
parx03082
ATP-dependent chromatin remodeling
parx03083
Polycomb repressive complex
parx04110
Cell cycle
parx04330
Notch signaling pathway
parx04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
parx00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
142066959 (HDAC1)
03083 Polycomb repressive complex
142066959 (HDAC1)
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
142066959 (HDAC1)
04350 TGF-beta signaling pathway
142066959 (HDAC1)
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
142066959 (HDAC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
parx03036
]
142066959 (HDAC1)
Enzymes [BR:
parx01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
142066959 (HDAC1)
Chromosome and associated proteins [BR:
parx03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
142066959 (HDAC1)
HDAC complexes
Sin3A-HDAC complex
142066959 (HDAC1)
BRAF-HDAC complex
142066959 (HDAC1)
REST complex
142066959 (HDAC1)
SHIP complex
142066959 (HDAC1)
MiDAC complex
142066959 (HDAC1)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
142066959 (HDAC1)
Heterochromatin formation proteins
Other heterochromatin formation proteins
142066959 (HDAC1)
Chromatin remodeling factors
NuRD complex
142066959 (HDAC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
142066959
NCBI-ProteinID:
XP_074971208
LinkDB
All DBs
Position
20:5975594..5991738
Genome browser
AA seq
480 aa
AA seq
DB search
MALTQGTKRKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKAN
AEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSAGGSVAS
AVKLNKQQTDIAVNWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG
DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEAI
FKPVISKVMETFQPSAVVLQCGSDSLSGDRLGCFNLTIKGHAKCVEFVKSFNLPMLMLGG
GGYTIRNVARCWTYETAVALDTEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNEYLE
KIKQRLFENLRMLPHAPGVQMQPIPEDAVQEDSGDEEEEDPEKRISIRNSDKRISCDEEF
SDSEDEGEGGRKNVANFKKAKRVKTEEEKEEEEKKDEKEEEKAKEEKAEPKGVKEETKST
NT seq
1443 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgacgcaggggaccaagcggaaagtctgctattactacgacggtgatgttgga
aactactattatggccaaggacatccaatgaaaccccacaggatccggatgacccacaac
ctactgctgaactatggcctctacaggaagatggagatatatcgccctcacaaggcaaat
gcagaagaaatgaccaagtaccacagtgatgactacataaaatttctgagatctattcgc
ccagataacatgtctgagtacagcaagcaaatgcaaagatttaatgttggggaagactgc
cctgtgtttgatgggttgtttgagttttgtcagctctctgctggaggctcagttgccagt
gctgtgaagctgaacaagcaacagacagatattgctgtgaattgggcgggaggccttcac
cacgctaagaagtcagaggcttctggcttctgttatgtcaacgatatcgtcttagctatc
ttggaactcctaaagtatcaccagagagtgctgtatattgacattgatattcaccatgga
gatggtgtggaggaagccttttataccacagatcgtgtcatgaccgtgtcctttcataag
tatggagaatacttcccaggaacgggggacctacgggatattggtgcaggcaaaggcaag
tactacgctgtcaactatcccctccgggacggaattgatgatgagtcctatgaagcaata
ttcaagccagtgatatctaaagtgatggagacgttccagcctagcgcagttgtcttgcag
tgcgggtcagattctctgtcaggggacaggctgggttgttttaatctgaccatcaaaggt
cacgccaagtgtgtggagtttgtaaaaagtttcaatttgcctatgctgatgctgggagga
ggtggctatacgatccgcaacgtggctagatgctggacctacgagactgctgtggctttg
gacactgaaattcccaatgaacttccgtataatgactattttgagtactttggaccagac
tttaagctccacatcagtccctcaaacatgactaaccagaataccaatgagtatcttgag
aagatcaagcaacgcctctttgagaatctgcgcatgctgcctcatgcccctggcgtccag
atgcagccaattcccgaggatgctgttcaggaggacagtggagatgaagaggaggaagat
cctgagaaacgcatttcaatccgcaattctgataagagaatatcctgtgatgaagaattc
tctgactctgaagatgaaggggaaggagggcgcaaaaatgttgctaactttaagaaagcc
aagcgtgtgaaaacagaagaggaaaaggaggaagaggagaagaaagatgagaaagaagag
gaaaaagcaaaagaggagaaagcagaacccaaaggggtgaaggaagagacgaaatccacc
taa
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