Phalacrocorax aristotelis (European shag): 142066961
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Entry
142066961 CDS
T11493
Symbol
SDC3
Name
(RefSeq) syndecan-3
KO
K16337
syndecan 3
Organism
parx Phalacrocorax aristotelis (European shag)
Pathway
parx04514
Cell adhesion molecule (CAM) interaction
parx04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
parx00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04514 Cell adhesion molecule (CAM) interaction
142066961 (SDC3)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
142066961 (SDC3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
parx00535
]
142066961 (SDC3)
Proteoglycans [BR:
parx00535
]
Cell surface proteoglycans
Syndecan family (transmembrane HSPG)
142066961 (SDC3)
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Ortholog
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GFIT
Motif
Pfam:
Syndecan
Motif
Other DBs
NCBI-GeneID:
142066961
NCBI-ProteinID:
XP_074971211
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All DBs
Position
20:2329504..2382024
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AA seq
419 aa
AA seq
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MPGEVPPPAPRGLRSLAVLLLLLLLSARTARAQRWRNENYERPVDLEGSGDDDPFGDDEL
DEVYSGSGSGYFEQESGLETAVTLITDTSITLPTTAAMLPITLVQPVATPFQPFPAEDTT
PEQTTSTLYIPRMTETPVIPSWKATTTSTTASESPSTTTTTTTTTTTATTATTPATTTTS
TTMATAKPTTVRRFLLPFVTKAATTRATTLETPTTSILETSTPTEVATSRLVPTSTAKPR
SLPKPSTSRTADLTEKSTALPSSPATLPPTEAPQMEPGEVTTVLDNELEVPVSSGPSGDF
EIREEEETTRPELGNEVMAVVTLPSGPGLGKNAEPGLIDNTIDSGNSAAQLPQKNILERK
EVLIAVIVGGVVGALFAAFLVMLLIYRMKKKDEGSYTLEEPKQANVTYQKPDKQEEFYA
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgcccggggaggtgccgccgccggcgccccgggggctgcggagcctcgccgtgctgctg
ctgctgctgctgctgagcgcccgcaccgcgcgggctcagcgctggcgcaatgagaactac
gagaggcctgtggacctggagggctctggggacgatgacccctttggggacgatgaactg
gacgaagtctactcgggctctggctcagggtattttgagcaggagtcagggctcgagacg
gcggtgaccctcatcacggacacgtccatcacactccccaccacagcagccatgctgccc
atcaccttggtgcagcccgtggcaaccccctttcaaccattccctgctgaggacaccacc
cccgagcagacaaccagcaccttgtatatccccaggatgacagagacaccagtgatcccc
agctggaaagcaaccaccaccagtaccactgccagcgaatctccttccaccacgaccaca
actacaaccacaaccaccacggctaccaccgccaccaccccagccacgaccaccaccagc
actactatggccactgccaagcccaccaccgtccggcggttcctgcttcccttcgtcacc
aaggcagccaccacccgggccaccaccctggagacacccaccacctccatccttgaaacc
agcacaccaacagaggtggccacgtcacggcttgtccccaccagcacggccaagcccagg
tccctgccaaaaccaagcacctccaggactgcagacctcacagaaaaaagcactgccttg
ccatccagtcctgccacactgccgcccacagaagccccccagatggagccaggggaggtg
acgacagtcctcgacaacgagctggaggtcccagtcagcagcggccccagcggggacttt
gagatccgggaggaggaagagacaactcgtcccgagctcggtaatgaggtgatggccgtg
gtgacgctgccctcgggaccggggctgggcaagaacgcagagccagggctgatcgacaac
acgatagactccgggaactcggccgcgcagctccctcagaaaaacatcctggagaggaaa
gaagtgttgatagcggtgatcgtgggcggcgtggtgggagccctcttcgctgccttcctg
gtcatgctgctcatctaccggatgaagaagaaggacgaaggcagttacacgctggaggag
cccaagcaagccaatgtgacctaccagaagcctgacaagcaggaggagttttatgcgtag
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