Phalacrocorax aristotelis (European shag): 142068006
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Entry
142068006 CDS
T11493
Symbol
CASC3
Name
(RefSeq) protein CASC3 isoform X1
KO
K14323
protein CASC3
Organism
parx Phalacrocorax aristotelis (European shag)
Pathway
parx03013
Nucleocytoplasmic transport
parx03015
mRNA surveillance pathway
parx03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
parx00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
142068006 (CASC3)
09122 Translation
03013 Nucleocytoplasmic transport
142068006 (CASC3)
03015 mRNA surveillance pathway
142068006 (CASC3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
parx03019
]
142068006 (CASC3)
Messenger RNA biogenesis [BR:
parx03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
142068006 (CASC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Serglycin
Motif
Other DBs
NCBI-GeneID:
142068006
NCBI-ProteinID:
XP_074973216
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All DBs
Position
23:6667626..6679831
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AA seq
721 aa
AA seq
DB search
MADRRRQRASQDSEDDSDSAASDSADSAASAARSRSGSGSGSGSGSGSPRPSHRPPRGAA
GALSAGPRGRGAESAAGGAAKSAPESECESEDGIEGDAVLSDYESAEDTEAEEEDYSEEE
SAKVELKQDSNDSCESAAKAGKGDEKPDSKGAVTGERQSGDGQESTEPVENKVGKKVPKH
LDDDEDRKNPAYIPRKGLFFEHDLRGQTQEEEVRPKGRQRKLWKDEGRWEHDKFREDEQA
PKTRQELIALYGYDIRSAHNPDDIKPRRMRKPRFGSPPQRDPNWSNERPNKPPRHQGADS
TSAPPRTFTNRSSAGTGRMPPPRNYPRMGGYKETRPSYRASEANVQHLSRNGEQVKQESN
YRAKRAEQTPPRDKSPEMEAAHVHGSPVKEEVALENQATAADAAQPPPDRPIEKKSYSRA
RRTRIKAGDAGKLADEVPASEGLTPVPPKPVQAETSPPPAKSSNWESPVESSLDGLEQEM
TQMNLTEQNWTPGQSQFIQPRELRGIPNHMHVGTGPPPQFNRMEEMAVQGGRVKRYSSQR
QRPPVPEPAPPMHISIMEGHYYDPLQFQGPIYTHSENPAPLPPQGMIVQPEMHLPHPGLH
PHQTPAPMANPGLYPPPVSMPPGQPPPQQLLAPTYFSPPGVMNFGNPGYPYPPGALPPPP
PPHLYSNTQAQSQVYGGVTYYNTVQQQVQPKPSPPRRTSQPVTIKPPPPELLVAGGKQGS
S
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggcggaccggcggcggcagcgcgcctcgcaggacagcgaggacgactcggactcggcc
gcctccgacagcgccgattcggccgccagcgccgcccgatcccgctcgggatccggctcc
ggctccggttcgggatccggttccccccgtccgtcgcaccgcccgccgcggggcgccgcc
ggggccctcagcgctgggccgcggggccgcggggccgagagcgccgccgggggggcggcc
aaaagcgcgcccgagtccgagtgtgaaagcgaggatggcattgaaggagatgctgtactc
tcagattacgaaagcgcagaagacactgaggcagaggaagaggattacagcgaggaagaa
agtgccaaagtggaactgaaacaggatagtaatgattcctgtgagtcagcagcaaaagca
gggaaaggggatgagaaacctgactccaaaggtgctgtaactggtgagaggcaaagcggg
gatgggcaggagagcactgaacctgttgagaataaagtcgggaaaaaagttcccaagcac
ctggacgacgatgaggatcggaagaacccggcttacatcccgcgcaaagggctcttcttt
gagcacgacctccgagggcagacgcaggaggaggaggtcaggccaaagggtcgtcagcgg
aagctgtggaaggacgagggccggtgggagcacgacaaattccgggaggacgagcaggcc
cccaagaccaggcaggagctgatcgcgctctatggctatgacatcaggtcagctcacaac
cccgacgacatcaagccgaggcggatgcgcaagccaaggtttgggagtcctcctcagcga
gacccaaactggtccaacgagaggccaaataagcccccaaggcaccaaggtgcagacagc
acttcagctcccccccgaaccttcaccaacaggagctctgcaggcacagggaggatgccc
ccaccgaggaactacccgaggatggggggctacaaagagacccgtccaagctaccgagct
tcggaagcaaacgtccagcatctgtctcgtaatggcgagcaagtgaaacaggagagcaac
tatcgagcaaagcgtgcagagcaaaccccaccaagagacaagtcacccgagatggaagcg
gcacatgtccacggcagcccggtgaaggaggaggttgctttggaaaaccaagccacggct
gctgatgctgcacagccaccgccagacagaccaattgaaaagaagtcttattcccgggca
agaaggaccagaatcaaagctggggatgcagggaagctggcagatgaagtgcccgcttca
gaagggctgactcctgtgcctccaaaacctgtgcaagccgagacgtcccccccaccagcc
aagagcagtaactgggagtcaccggtagaatccagcttggatggacttgagcaagagatg
acccaaatgaatctcactgagcagaactggactccggggcagtcgcagttcatacagccc
cgggagctgaggggtattccaaaccatatgcacgtgggaactgggccaccgcctcagttt
aacaggatggaggaaatggcggtgcaggggggccgcgtgaagcgctactcgtcgcagcgg
cagagaccaccggtgccggagcctgccccccccatgcacatcagcatcatggaagggcac
tactacgacccactacaattccagggaccaatctacacccacagtgagaacccagccccg
ctgccgccccaagggatgatcgtacagccagaaatgcacctccctcatccaggtttacat
ccccaccagacgccagcccccatggcaaaccctgggctgtaccccccgccagtctccatg
ccgccgggccagcccccgccgcagcagctgcttgcaccgacttacttctcccctcctgga
gtcatgaattttgggaatcctggctacccctaccccccaggagcactaccccctccgccg
cctcctcatctctattccaacacgcaggcccagtcccaggtgtacggaggggtcacgtac
tacaacactgtccagcagcaagtgcagcccaagccttctccacctcgaaggacgtcccag
cctgtgactatcaagccaccgcctcctgagcttctcgttgcaggtggtaagcagggctcc
agttaa
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