Muribaculum intestinale: A4V02_03400
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Entry
A4V02_03400 CDS
T04438
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pary
Muribaculum intestinale
Brite
KEGG Orthology (KO) [BR:
pary00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pary03016
]
A4V02_03400
Enzymes [BR:
pary01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
A4V02_03400
Transfer RNA biogenesis [BR:
pary03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
A4V02_03400
Prokaryotic type
tRNA splicing ligases
A4V02_03400
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Paralog
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GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ANU64733
UniProt:
A0A1B1SDE8
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All DBs
Position
complement(867500..868798)
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AA seq
432 aa
AA seq
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MSAESRCAVAKPSIPIAIEGYDVKIFTDNIEEKALEQIKELLSIDVFSDKKIRIMPDVHA
GAGCVIGFTGDLGDKVIPNIVGVDIGCGMRILNLGKLSEIDFHAFHEHILGNVPSGMIVR
EDRFGFKPLVGEEMEIYREAKQLVTELYCYRELKDTGRINKSIGSLGGGNHFIELDKDDE
DNVYLVIHTGSRNLGKQVADIYQAKAVKHLTDGADELEETIKRTIEEYKAAGRRSKLQSV
IKKLRKEHQDAEPNLPAALCYVEGYGREHYLHDMRLCQRWAVLNRKLISLLLMRFFPGVE
VKEEFESVHNYISDDNIIRKGSISAADGERCIIPLNMRDGSLLCTGKGNPDWNCSAPHGA
GRVLSRTQAYEKITMEDFEASMQGIYSESVNDFTRDESPMVYKPAEEIIANIGETVNIDT
IIRPIFNFKASK
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgtcggctgaaagccggtgcgcagtggcaaagccatcaatacccatcgcaatagaagga
tatgacgtaaagatatttacggataacatcgaggagaaggccttggaacagattaaggaa
ctgctttcgattgacgtgttttcagataagaaaatacgcatcatgcccgacgtacacgcc
ggggctggttgcgtcatagggttcaccggcgacctcggagacaaggtaattcccaatata
gtaggtgttgacattggttgcggtatgcgcatcctcaatctcggcaaactctccgagatt
gactttcatgcattccacgagcatattctcggcaatgtcccttcgggtatgattgtgcgt
gaagaccgtttcggtttcaagcctcttgtcggagaggaaatggaaatctaccgtgaggca
aagcaactggtgacggagctctattgttaccgtgagctgaaagataccgggcgtatcaac
aagtcaatcggctcgctcggcggcggcaaccatttcatcgaacttgacaaggatgatgag
gacaatgtttatcttgttatccataccggttcacgcaacctcggcaagcaggtcgctgac
atctatcaggcaaaagcagtgaaacatcttaccgacggagccgatgagttggaagaaaca
atcaaacgtaccattgaggaatacaaggcggcagggcgtcgttcaaaattgcagagcgtc
ataaagaagttgcgtaaggagcatcaggacgccgagccgaatcttcccgccgccctttgc
tatgtcgagggttacgggcgtgagcactatctccacgatatgcgtctctgccagcgatgg
gctgtgctcaaccgtaagcttatatctctattgcttatgcgattcttccccggcgtggag
gtaaaggaggaatttgaatccgtccataattatatcagcgatgataatatcatccgcaaa
ggttctatctcggctgccgatggtgagcgttgtatcattcctctgaatatgcgcgacggt
tcattgctctgcaccggcaagggcaatccggactggaactgttcggcgcctcacggagcc
ggacgagttttgagccgcactcaggcatacgagaaaattacgatggaagacttcgaggca
tccatgcagggtatctattcggagtcggtcaacgacttcactcgtgacgaatcgcctatg
gtctataaaccggcagaagagatcatagccaacatcggtgaaacagtcaatattgacact
atcatccgtccaatctttaacttcaaggcatcaaaatga
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