Parasaccharibacter sp. TMW 2.1888: DTQ13_00020
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Entry
DTQ13_00020 CDS
T08091
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
parz
Parasaccharibacter sp. TMW 2.1888
Brite
KEGG Orthology (KO) [BR:
parz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
parz03032
]
DTQ13_00020 (gyrB)
03400 DNA repair and recombination proteins [BR:
parz03400
]
DTQ13_00020 (gyrB)
Enzymes [BR:
parz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
DTQ13_00020 (gyrB)
DNA replication proteins [BR:
parz03032
]
Prokaryotic type
DNA Topoisomerases
DTQ13_00020 (gyrB)
DNA repair and recombination proteins [BR:
parz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
DTQ13_00020 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
SBD
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
UPO78996
LinkDB
All DBs
Position
3920..6367
Genome browser
AA seq
815 aa
AA seq
DB search
MSESHNQPEIQSSDHEEYGASSISVLRGLDAVRKRPGMYIGDTDDGSGLHHMVFEIIDNA
VDEVQAGFASYCILTLNGDGSVTVRDNGRGIPTDLHEEEGISAAEVVLTKLHAGGKFNQN
SYKVSGGLHGVGAAVVNALSETMDVRIWRQGKEHAIHFRHGERVAPLAVIGDSDEENGTE
VTFKPSAETFSKTEFEFSILERRVRELAFLNSGMKIILRDERHSEPREVVFHYEGGLTAF
VKWLNSSKTPLIDPPITGELQDETSGIKVEFALCWNDSFHETMLCFTNNIPQRDGGTHLA
GFRQALTRAVGKYASLLGNKKETSNLTGEDMREGLSAVLSVKVPDPKFSSQTKDKLVSSE
VQPVVHTIAADMIGHWFETHPKEARIIIAKIADAASAREAARRARELTRRKGVLDVSSLP
GKLADCQERNPEGAELFIVEGDSAGGTAKQGRDRRFQAILPLRGKILNIERARFDRMLGS
AEIGTLITALGTGIGHGPAEQGGFNIDKLRYHKIVIMTDADVDGSHIRTLLLTFFFRQMP
QLIENGHLYIAQPPLFRAKRGQEERYLKDEPALDSYLLDKALSNASLTCHDGTVLDGAEL
RDVIDRCSRLAQDMRALSARVPLWIMEQAAVSGLINPDAAIRQKAVDGFLARLEAASPEN
ERGWEVEADSHGVTCRRFLRGVGERYTFEATLLRSSEARRLLAQSQWLAEFFSRPVTLQL
DQKNFEFSGPGMMMEQILAQGRRGLAINRFKGLGEMNDEQLWHTTLDPATRTLLQVQVGD
VEEAGQVFSTLMGDVVEPRREFIVDNALKVANLDV
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaatcccataaccagccggaaattcagtcttccgatcatgaggaatatggcgcc
tcttccatctccgtcctgcgggggctggatgctgtccgcaagcggcctggcatgtatatc
ggggatacggatgatggctccggcctgcatcacatggtcttcgagatcattgataatgcc
gttgatgaggtacaggcaggtttcgcctcctactgcattctcactctgaatggggacggc
tctgtcacagtccgggataacgggcgtggtatcccgacagacctgcacgaggaagagggg
atcagtgcggctgaagtcgtgctgaccaaactgcatgccgggggcaaattcaatcagaat
tcctacaaggtttccggcggtctgcacggtgtgggggctgcggttgtcaatgctctctcc
gagaccatggatgtacgcatctggcgacagggcaaggaacatgccattcatttccggcac
ggtgagcgtgtagctcccttggcggtcatcggtgattcggacgaagaaaacggaacggaa
gtcaccttcaagccgagtgcggagacattctccaaaactgaattcgaattcagcatcctg
gagcgccgtgtccgtgagctggccttcctgaattcgggtatgaagatcatcctgcgtgat
gagcgtcacagtgagccacgggaggttgtcttccactatgaaggggggctgacagcgttc
gtcaaatggctcaacagctccaagacgccactgatcgaccctcccatcaccggggagctg
caggatgaaacatctggcatcaaggtggaatttgctctctgctggaatgacagcttccac
gagaccatgctgtgcttcaccaacaacattccccaacgtgatggcggcacccatctggcc
ggtttcaggcaggccctgacgagggccgtcgggaaatatgcctctctgctgggcaacaag
aaagaaaccagcaatctcacaggtgaggatatgcgggaggggctctccgccgttctttcc
gtcaaggttcccgaccccaaattctcatcccagacaaaggacaagctggtttcttccgaa
gttcagcctgtcgtgcacaccattgccgccgacatgatcggccactggttcgagacgcat
cccaaggaagcccgcatcatcattgccaagattgctgatgccgccagtgcgagagaggcc
gcccgccgtgcccgggagctgacacggcgcaaaggcgttctggatgtctcatccctgccg
ggcaaactggccgactgccaggaacgcaacccggaaggggcagagctcttcattgtggag
ggggattctgctggcggaacagcaaaacagggacgggaccgccgtttccaggccattctg
cccttgcgtggcaaaattctcaacattgagcgtgcccgcttcgaccggatgcttggctct
gccgaaattggcaccctcattacagccttgggcacggggatcggtcatggtccggccgag
caggggggcttcaatattgacaagctccgttaccacaagattgtcatcatgacggacgct
gacgtggatggctcccacatccgcaccctgcttctgaccttcttcttccggcagatgccc
caactcatcgaaaacggccatctctacattgcccaaccgccgctcttccgtgccaaacgt
ggacaagaggaacgctacctcaaggatgaacctgcactggacagctacttgctggacaag
gccctgagcaatgcatccctgacctgccatgacggaaccgtactggacggtgcggaactc
cgtgacgtgattgaccgttgcagccgactggcacaggacatgcgggcactttcagcccgt
gtcccgctctggatcatggagcaggcggctgtcagcgggctcatcaaccctgatgcagcg
atccgacagaaagcagtcgatggcttcctggccagactggaagcagcatctcccgaaaat
gagcggggctgggaggtggaggccgacagccatggcgtcacctgccgtcgttttctccgt
ggtgtgggagaacgctacacgtttgaagccacactgcttcgctccagtgaagcacgccgt
cttctcgcgcagtcccagtggcttgctgaattcttcagcaggcccgtgacattgcagctt
gaccagaagaatttcgaattttctggcccaggcatgatgatggaacagatactggcccag
gggcgccgtggtctggccatcaaccgcttcaagggcctgggcgaaatgaatgatgagcag
ctctggcacaccacgctggacccggccacccggaccctcctgcaggtgcaggttggcgat
gtcgaagaagcggggcaggttttctccaccctcatgggggatgttgtcgaaccccgtcgt
gagttcatcgtggataacgcactgaaggttgccaatcttgacgtctga
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