Parasaccharibacter sp. TMW 2.1888: DTQ13_02060
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Entry
DTQ13_02060 CDS
T08091
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
parz
Parasaccharibacter sp. TMW 2.1888
Pathway
parz03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
parz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
DTQ13_02060 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
parz03021
]
DTQ13_02060 (rpoB)
03400 DNA repair and recombination proteins [BR:
parz03400
]
DTQ13_02060 (rpoB)
Enzymes [BR:
parz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
DTQ13_02060 (rpoB)
Transcription machinery [BR:
parz03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
DTQ13_02060 (rpoB)
DNA repair and recombination proteins [BR:
parz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
DTQ13_02060 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
DOCK-C2
Motif
Other DBs
NCBI-ProteinID:
UPO79318
LinkDB
All DBs
Position
complement(437898..442064)
Genome browser
AA seq
1388 aa
AA seq
DB search
MAITKSFTGRKRIRKSFGRIPEIAPMPNLIDVQRASYEAFLQMNVRPDSREPAGLQEVFR
SVFPIHDFAGRGRLDFQYYEFEEPKYDVEECIQRGLTYAAPLKVILRLTTWDIDEDTGTR
SIHDLKEQPVYMGDMPLMTDNGTFIINGTERVIVSQMHRSPGVFFDHDKGKTHSSGKYLF
AARIIPYRGSWLDFEFDAKDIIHVRIDRKRKLPVTTLLYALEGDNYLKAREAKLAEGGDV
DTLEVAGMDEDEILSTFYDVVPFTRMGGEWARPFEPDAFRGLKLLSPLVDADTGEVVADA
ETKLTARVVRKIAEKTRVVQVGRLDILGRFIAHDLVNEKTGEIYAEAGEELTEEKLAELE
ELGLKELPLLAIDGTHGPWIRNTLMADKNTTREEALIDIYRIMRPGEPPTRETAEAMLHG
LFFSQDRYDLSAVGRVKMNMRLDVDAPDTLRTLRKEDILRTVKILCDLKDGRGQVDDIDN
LGNRRVRSVGELMENQYRIGLLRMERAIRERMGSVDIDTVMPHDLINAKPAAAAVREFFG
SSQLSQFMDQTNPLSEVTHKRRLSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGP
NIGLINSLATYAKVNKYGFIETPYRLVKDGVFQDGWKYLSAMEEERLLVAQADAKQSDNR
LTDELVAVRQTGDFRLVPPEQVTACDVSPKQLVSVAAALIPFLENDDANRALMGSNMQRQ
AVPLVKADAPLVGTGMEGPVAHDSGATIIAKRGGVVDQLDGARIVIRATDEQGATQGVDI
YRLRKYMRSNQSTCLNQRPLVKVGDLVAAGDIIADGPSTELGELALGRNVLVAFVPWNGY
NFEDSILISERIARDDIFTSIHIEEFEVMARDTKLGQEEITRDIPNVGEEALRNLDEAGI
VYVGAEVNPGDILIGKVTPKGESPMTPEEKLLRAIFGEKASDVRDTSLKLPPGTSGTVVD
VRVFSRRGVDKDERAMAIERAEIERLAKDRDDERAIQERSFYNRLKERLVGQEAAAGFKG
VRAGTPITAELLGEHPRVTWRNIPVADVAVMAELETLCREFDGAIKRINNRFDNKVEKLQ
RGDELPPGVMKMVKVFIAVKRKLQPGDKMAGRHGNKGVVSRVVPVEDMPFLENGQPVDLL
LNPLGVPSRMNVGQILETHLGWACANIGQSIGAMVDEYQRTGERRQELLDRLKDVYGEKI
FNEDIATMDNDQLIELANNLRKGVPIATPVFDGASIPDIEEMLKKAGVSESGQSQLIDGR
TGEKFERQSTVGYIYMLKLHHLVDDKIHARSIGPYSLVTQQPLGGKAQFGGQRFGEMEVW
ALEAYGAAYTLQEMLTVKSDDVSGRTKVYEAIVREQDDFEAGIPESFNVLVKELKSLGLN
VELEQGGL
NT seq
4167 nt
NT seq
+upstream
nt +downstream
nt
atggcgatcacaaaatcgttcacagggcgtaagaggatccgcaagagcttcgggcgcatt
cccgaaattgcgccgatgcctaatttgattgacgtgcagcgggcttcctatgaagctttc
ctgcagatgaatgtgcgccccgacagccgggagccggctggccttcaggaggtgttccgt
tcagtttttccgattcatgattttgctggccgtgggcggctggatttccagtattatgaa
ttcgaagaaccgaaatacgatgtggaagagtgcatccagcgtggcctgacctatgcggcc
ccgctgaaggtcattctgcgtctgacaacgtgggatattgacgaggatacggggacccgc
tccattcacgacctgaaggagcagccggtctatatgggcgacatgccgctcatgacagac
aacgggaccttcatcatcaacgggacggaacgtgtcatcgtttcccagatgcatcgtagt
cccggcgtgttcttcgatcacgacaagggcaagacacactcttccgggaagtatcttttt
gctgcccgtatcatcccttaccgtggttcctggctcgatttcgagttcgatgccaaggat
atcatccatgtccgcatcgaccgcaagcgcaagctgccggttaccacgctgctctatgca
ctggaaggtgacaattacctcaaggctcgtgaagccaagctggccgagggtggtgacgtc
gatacacttgaagttgccggtatggatgaggacgagattctctccactttctacgatgtc
gtgcccttcacccgcatgggtggcgagtgggcccgcccgtttgagccggatgccttccgt
ggcctgaagctgctcagcccgctggtggatgctgataccggcgaggttgtggcagatgcc
gagaccaaactgacagcccgtgtcgttcgcaagatcgccgagaagacccgtgttgtgcag
gtggggcgtctggatattctgggtcgcttcattgcccatgaccttgtcaatgaaaagacc
ggtgaaatctatgccgaggctggcgaggagctgacggaagagaaactggccgagctggaa
gagctgggcctgaaggagcttccgcttctcgcaattgacgggacgcatggcccgtggatc
cgcaacaccctgatggcggacaagaacaccacgcgggaagaggcgctgatcgatatttat
cgcatcatgcgccctggtgagccgccgacccgtgagacagcagaagccatgctgcatggt
ctgttcttctcgcaggaccggtatgacctgtctgccgttggccgtgtaaagatgaacatg
cggctggatgtggatgcgcccgatacgctgcggacgctgcgcaaggaagacatcctgcgg
acggtcaagatcctctgcgacctcaaggatggtcgtggtcaggtcgatgatatcgacaac
ctcggcaaccgtcgtgtccgttccgtcggcgagctgatggagaaccagtatcgcatcggt
ctgctgcgtatggagcgcgccatccgtgagcgtatgggctctgtcgatattgacacggtc
atgccgcatgacctgatcaacgccaagcctgctgctgctgccgtacgtgagttcttcggt
tcctcccagctcagccagttcatggatcagaccaatccgctctccgaggtgacacataaa
cgtcgcctgtcggcccttggtccgggcggtctgacccgtgagcgtgcaggctttgaagtc
cgtgacgttcatccgacccattatggccgtatctgcccgatcgagacgccggaagggccg
aacatcggtctgatcaactccctggccacttatgccaaggtgaacaagtacggcttcatc
gagacgccgtatcgtctggtgaaggatggcgttttccaggacggctggaagtatctctcc
gccatggaggaagaacgcctgctggtggcgcaggccgatgccaagcagagcgacaatcgt
ctgacggatgagctggtggctgtccgccagaccggtgacttccgtcttgtgccgccggaa
caggttaccgcctgtgacgtgtcgccgaagcagctggtttccgtggctgctgcgcttatt
ccgttcctggaaaacgacgacgccaaccgtgcgctgatgggttccaacatgcagcgtcag
gccgtgccgctggtgaaggctgatgccccgctggtcggtaccggcatggaaggccctgtg
gcgcacgactctggtgcgaccatcattgccaagcgtggcggtgtggtggaccagctggat
ggtgcccgtatcgtgatccgtgcgacggacgagcagggggccacccagggcgtggacatc
taccgtctgcgcaaatacatgcgttccaaccagtctacctgcctcaatcagcgtccgctg
gtgaaggttggcgatctggtcgctgccggtgacatcatcgctgatggtccgtccaccgaa
ctgggtgagctggctctgggccgtaatgtgctcgtggccttcgtgccgtggaacgggtac
aacttcgaggactccatcctgatctccgagcgtatcgcccgggatgacatcttcacttca
attcacattgaagagttcgaggtcatggcccgtgataccaagctgggtcaggaagaaatc
acccgtgacatcccgaatgtcggtgaggaagccctgcgcaaccttgatgaggccggcatt
gtctatgtcggtgccgaggtcaatccgggtgacatcctgatcggcaaggtgacgccgaag
ggtgaaagcccgatgacaccggaagaaaagcttctgcgtgccatcttcggtgaaaaggct
tctgatgtacgtgacacctccctcaagctgcccccgggcacgagcgggacggtggttgat
gtccgtgtcttctcccgccgtggtgtggacaaggacgagcgtgccatggccatcgagcgg
gccgagatcgagcgtctggccaaggaccgtgatgacgagcgtgccatccaggagcgcagt
ttctacaaccgcctcaaggagcgtctggtcgggcaggaagctgctgcaggcttcaagggc
gtgcgggctggcacaccgatcacggccgagctgctgggtgagcatccccgtgtgacgtgg
cgcaatattcctgttgccgacgtggccgtcatggccgagctggaaacgctgtgccgtgag
tttgatggtgccatcaagcgcatcaacaaccgcttcgacaacaaggtcgagaagctccag
cgtggtgacgagctgccgcctggtgtgatgaagatggtcaaggtcttcattgccgtgaag
cgcaagcttcagccgggtgacaagatggctggccgtcacggtaacaagggtgtggtgtcc
cgtgtcgttcctgtcgaggacatgccgttcctcgagaatggtcagccggttgatctgctg
ctgaatcctctgggcgtgccgtcccgcatgaatgtggggcagattctggagacgcatctg
ggctgggcctgtgccaatatcggccagagcatcggtgcgatggttgatgaatatcagcgc
acgggtgagcgtcggcaggagctgctggaccgtctgaaagatgtctatggtgagaagatc
ttcaatgaagatatcgccacgatggacaacgatcagctgatcgagctggccaacaacctg
cgcaagggcgtgccgatcgcaactccggtgtttgatggtgcctccatccctgacatcgag
gagatgctgaagaaggctggtgtcagcgagagtggtcagtcccagctgatcgacgggcgt
acgggcgagaagttcgagcgtcagtccacggtgggctacatctacatgctgaagctgcat
caccttgttgatgacaagattcatgcccgctcgatcggtccttactcgctggtcacccag
cagccgcttggtggtaaggcccagttcggtggtcagcgtttcggtgagatggaggtctgg
gcactggaggcttacggtgctgcctacacgctgcaggaaatgctgacggtgaaatcggac
gatgtgtccggccggacgaaggtgtatgaggcgatcgttcgtgaacaggacgactttgaa
gctggtattccagagagcttcaacgttctggtgaaggaactgaagtcgcttggtctgaat
gtcgaacttgagcagggagggctgtga
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