Parasaccharibacter sp. TMW 2.1888: DTQ13_02875
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Entry
DTQ13_02875 CDS
T08091
Symbol
addA
Name
(GenBank) double-strand break repair helicase AddA
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
parz
Parasaccharibacter sp. TMW 2.1888
Brite
KEGG Orthology (KO) [BR:
parz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
parz03400
]
DTQ13_02875 (addA)
Enzymes [BR:
parz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DTQ13_02875 (addA)
DNA repair and recombination proteins [BR:
parz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
DTQ13_02875 (addA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
UvrD_C_2
PDDEXK_1
AAA_19
Motif
Other DBs
NCBI-ProteinID:
UPO79447
LinkDB
All DBs
Position
complement(612891..616604)
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AA seq
1237 aa
AA seq
DB search
MIQLASQGQDNHQRALKEANTAQKKASNPMASVFVSASAGSGKTKLLIDRLLRLMLPLEQ
IGEDGQPVLLDGSEPSRILCLTYTKAAAAEMAHRLQSHLGRWVSLSDERLGEALTALDVP
NTAATRECARGLFLKVLDAPGGLQIETIHAFCQSLLRRFPLEAELDPHFVLMEEADGQMA
LRRALEDSLAQNQDPVQVLAGLTGFDRLMGLLGQFNAQSGLLQPLLRLWEMWPERVQEAY
QGLLDVGSEFSEVLKVEACQLEDEAAWRADIQAALPQLAPSKREKFETFLRWLECDNPAE
RDDAFLLSLLFTKEGGVMDMSRHLGAKARKAAPDLVQRLLDEARRQQEMQERIRIQRLLE
INTAFLSLALPVMGRFADEKRNRGTVDYNDLIARTRAVLREPGAAWVLYKLDGGIDHLLL
DEVQDNSGLQWEIAGALTTDFFSGSGVREDMPRPRTIFAVGDFKQSIYSFQGAEPEQFHK
WRQEFARRVKNAGLLWEEPQLNVSFRSLSPVLKFVDAVFAGEAARDGLREPGEDGRLIHR
SARSGGGGRVELWPLVPVDGTAGEVPDPWRAPEKNEDQRSTQQRLADALATHIRAQIGRP
LQSDTAPLKAGEVMILVPKRSAFLRALIRALKARDVPVASFISSGLVEQPAVQDLMTLCD
ALLLPQDDLSLASVLTSPLGGLSDESLMALATADGQRRELGRGGMPLWSLLARRHEERPE
WRAAWERLQALYKRVDYDSPYEILMQALGVQGGRTRLLARLGAEAAEPVDELLTVALTYE
TQHPPSLQGFLHWLRASTVESKREVEAEIDAVRIMTVHRSKGLQARLVILPDMTGTAGRP
DPLLWTELDADMPEGGLADDALHGPLWIPQVKMGTERTWELLAHQQARQKEEKNRLLYVA
LTRASDALLICGWKPKKNSSQSCWYDHCLAGMNRLKEQLGEEAVGSSGDGHDDLESLFRM
GLTVKDEPFAGDWEGESLVLEMPVMASAVAGIRPDAAPVRPALPAWMGQAPDWQVTPAPH
EDALARPLAPSRPEAAAYGPLPAARSPLEIMREGLVIPQPARRRQDAMERGTLVHRLLQF
LPDLPASERRLKAEAWLRHTMPGLAEEDVTSLAGHVVSVVEMDVLAPLFGPGSRAEQGVS
GTLGRPGDGSGRVVLGQVDRFRFDGQTVWLCDYKTGRPPSRPERVPSAYLGQMASYRRVM
QGLYPHCPVRCFIVWVDGPAVTELPESLLAAQENLPR
NT seq
3714 nt
NT seq
+upstream
nt +downstream
nt
atgatccagcttgcatcacagggacaggataaccatcagcgggccctgaaagaggccaat
acggcacagaaaaaggcctcgaatcccatggcttccgtctttgtgtcggcctcggcaggg
tcggggaagacaaagctgctgattgaccggctgttacgtctcatgctgccactggaacag
attggtgaggatgggcagcctgtccttctggacgggtcggagccttcccgcatcctgtgc
ctgacttatacgaaagccgctgccgctgagatggcgcatcgtctgcaaagccatctcggt
cgctgggtgtctctttcagatgaaagactgggagaggcactgactgcactggatgtgccc
aacacggctgctacacgggagtgtgcccgtgggctgttcctgaaagtgctggatgcgccg
ggcggtttgcagattgaaaccattcatgccttctgccagtcccttctgcggcgcttccca
ctggaggcagagctggacccgcatttcgtcctgatggaagaggcggacggacagatggcc
cttcgccgtgcgctggaggacagtctggcgcagaatcaggaccctgtgcaggttctggca
ggcctgaccggttttgacaggctgatgggcctgcttgggcagttcaatgctcagtcaggt
ctgcttcagcccctgttgcggctttgggagatgtggccggagcgggtgcaagaggcctat
caggggcttcttgatgtagggagcgagttttcagaggttctgaaggtcgaagcctgccag
ctggaagatgaagcggcatggcgggcggacattcaggcagctttgccgcagctggcgcct
tccaaaagggaaaagttcgaaacgttcctgagatggctggagtgtgacaatcctgccgag
cgggatgatgccttcctgctgtcgctcctgttcacgaaggaaggcggggtcatggacatg
agccgccatctgggggccaaggcccgcaaggcggcccctgatttggtacagcgtcttctg
gatgaagccagacgccagcaggagatgcaggagcgtatccgtatccagcggcttctggag
atcaacacggcttttctgtcccttgccctgccggtcatggggcgttttgccgatgagaaa
agaaaccgtggcacggtcgattataatgatctgatcgcccggacgagggctgtcctgcgg
gagccgggggcagcatgggtgctgtacaagctggatggcggtatcgaccatcttctgctg
gatgaggtgcaggacaattccggcctgcaatgggaaattgccggggccctgacgacagat
tttttctctggttccggcgtgcgggaggacatgccccgtccccggaccatctttgcggtg
ggggatttcaagcagtccatctacagtttccagggcgcagagccggaacagttccacaaa
tggcggcaggaattcgctcgccgtgtgaagaatgccggtcttctctgggaggaacctcag
ctcaatgtgtcgttccggtccctctcgccggttctgaaatttgttgatgccgtttttgcg
ggagaggctgcacgggacggcctgcgggagccgggggaagatggcaggctcatccaccgt
tcggcccggtccggcggtggggggcgtgtggagctgtggcctctggtacctgtggatggg
acagccggagaagtgcctgatccatggcgtgcgccggagaagaacgaggatcagcgtagc
acccagcagcgtctggccgatgcgctggccacgcatatacgggcgcagatcggccgtccg
ctccagtcggatacggccccgctgaaggccggagaggtgatgattctggtgcccaagcgc
tccgccttcctgcgggcgctgattcgggccctgaaggcacgggatgtgccggtggccagc
ttcatcagcagcgggctggtggagcagccagccgtgcaggacctgatgaccctctgtgat
gcgctgcttctgccgcaggatgatctcagtctggccagcgtgctgacatccccccttggt
gggttgagtgatgagtctctcatggccctggccacggcggatgggcagcggcgtgagctg
gggcggggcgggatgccgctctggagtcttctggcccggcggcatgaggagcggccggaa
tggcgggcggcatgggagcggttgcaggccctctacaaacgtgtggattatgattcaccc
tacgagattctcatgcaggcgctgggtgtgcaggggggacggacccgccttctggcccgt
cttggtgctgaagctgccgaaccggtggatgaactgttgacggtcgccctgacatatgaa
acccagcatccgccatccctccagggtttcctgcactggctgcgtgccagtacggtggag
agcaagcgtgaggtggaggccgagattgatgccgtgcgcatcatgacggtccatcggtcc
aaggggttgcaggcccgtctggtcattctgcctgatatgacagggacggctggccggcct
gaccctctgctctggacagagctggatgccgatatgccggagggtggccttgcggatgat
gcgttacatgggccgctctggataccacaggtcaagatggggacggagcggacatgggag
cttctggcacaccagcaggcccgccagaaggaggagaagaaccgtctgctctacgtggct
ctgacacgtgccagtgatgcgttgctcatctgtggctggaagccaaagaagaacagcagt
cagagctgttggtatgatcattgtctggctggcatgaaccgtctgaaagagcaactggga
gaggaggctgtcggttcgtccggggatgggcatgatgatctggagagtctcttccggatg
ggattgacggtgaaggatgaacctttcgcaggagactgggagggggaaagtcttgtgctg
gagatgcccgtcatggcttcggcagtagcggggatacgtcccgatgcggcgccggtccgg
cctgctctgcctgcctggatgggacaggcaccggactggcaggtgacccctgccccccat
gaggatgccctggcccgtccgctggccccaagccgaccggaagcggcggcctatgggcca
ttgcctgcggcccggtcccctttggagatcatgcgggaggggctggtcattccacagccg
gcccgtcgccgtcaggatgccatggagcgggggacgctggtccacaggctgctccagttc
ctgccggacctgcccgcatcagagcggcggctgaaggccgaagcatggctgcggcatacc
atgccggggttggcggaggaggacgtgaccagtctggcagggcatgtggtttctgtcgtg
gagatggatgttcttgcgccgcttttcgggccggggagccgggccgagcagggtgtgtcc
ggtacgctgggccgcccgggggacgggtcgggtcgggtcgtgctggggcaggtggaccgc
ttccgctttgatggacagacggtctggctctgcgattacaagacgggccgccccccatcc
cggccggagcgtgtaccatcggcctatctggggcagatggccagctaccggcgtgtcatg
caggggctgtatccccattgtcccgtgcggtgtttcattgtctgggtggatgggcctgcc
gtgacggagctgccggagtctctgctggctgcacaggaaaacctcccccgatga
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