Parasaccharibacter sp. TMW 2.1888: DTQ13_02880
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Entry
DTQ13_02880 CDS
T08091
Symbol
addB
Name
(GenBank) double-strand break repair protein AddB
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
parz
Parasaccharibacter sp. TMW 2.1888
Brite
KEGG Orthology (KO) [BR:
parz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
parz03400
]
DTQ13_02880 (addB)
Enzymes [BR:
parz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DTQ13_02880 (addB)
DNA repair and recombination proteins [BR:
parz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
DTQ13_02880 (addB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDDEXK_1
Motif
Other DBs
NCBI-ProteinID:
UPO79448
LinkDB
All DBs
Position
complement(616601..619678)
Genome browser
AA seq
1025 aa
AA seq
DB search
MGQAHPLNIATIPASCPFLDTVVQNWLERVGVEAGPDGRSGGDNGTILVPGRRVARALME
AFLRVLDGRPALLPAIVALGDVEQQSLFPMTVDETVPPSVGPVFRLAILARLILAAPFFT
TVSGRDGGTIDRVWPLAQALAELMDDAERNGVDLYEALPKAVADDFAGHWQKTLEFLRIV
TEAWPAILREEERSNIMARQVALIEAQARLWADMPPDYPLWAVGFVDGSAGVATALEAVA
ALPRGMVVFQGLDCGMEDEWWNQLPPTHPQALFREFLSRAGINRADIAIWGYPLRPEREN
LFQHVMLPEAGIACWGQPVGDVRPSGISLLPAADSQQEAQAIALILRDVASQPGRSGALV
TPDRGLADRVRAELLRFGIHADDSAGEPLVRTPAAVFLRLIAQAVTARFSPVALLSVLKH
PLAALGGSPGRARASARLLERRLLRGPAPQPGMDGLRHALEALQEAQQTDNGYQADAPDS
PERLAIFLDRMEEAFRPLLGLESTARVPELLAALLETAEQLAAVEGEGYEADQPRPGSRL
WLGEDGGALSRHFVELMSHTGDLPPQPLRALEGFLTSSMAGKTLTGLRGYQGGVELAHPR
ISIYGVLEARLLAFDTVILGGLNEGSWPPAAESGPWMSRPMRQRVGLPSPERRIGAQAHD
FVSAALSSEQVILSNAQRREGSPAVPARWLMRLSAFLEGRQITLPVHPALAWQTMLDMPA
GEAKPVAPPKPRPPLSLRPRRLSITQLDTLKLDPYTIYARHVLGLKVLAPLEEGAEHADY
GKIVHTALERMIREHPGTWPAHAAQILHRHFDDALDEALVNPALASWWRPRLHRIADWVL
AQEHWRHVGRLNCTSHTEVSLAYTLRGLPGGDFHITGRADRIDLWNTPGQEDTTGRILDY
KTGTPPESNEVIAGWSSQLVLEAAFLKEGAFEGLPAVETDALAYWKLSGGEEPGKEVVIP
SVKAKVTLGDLVGPALEQLRTLLTDYDDPSRPYRSQPWAGKEHRYSDYTQLARVAEWRLA
GDDEE
NT seq
3078 nt
NT seq
+upstream
nt +downstream
nt
atgggacaggcacatccgctcaatattgcaaccattccggcatcctgtccgtttctggat
acggtcgtgcagaactggctggagcgtgtgggggtggaggctggcccggacgggcgcagc
ggtggtgacaatggcacgattctggtgcctggccgccgtgtggcccgtgccttgatggaa
gccttcctgcgggttctggatggccgtccggccctgctgcctgccatcgtggctctggga
gatgtggagcagcagagcctgtttcccatgacggttgatgagactgttccgccttctgtg
gggccggttttccggctggccattctggcccggctgattctggcggcaccttttttcacg
accgtatcaggccgggacggcggtacgatcgaccgggtctggccgctggcgcaggctctg
gcagagctgatggatgatgccgagcggaatggtgtggacttatatgaagccctgccgaaa
gccgtggctgatgattttgccggacactggcagaagacgctggagttccttcggatcgtc
acggaagcatggcctgccattctacgggaggaagagcgtagcaacatcatggcccgtcag
gtcgccctgattgaggcgcaggcccgcctctgggcggatatgccgccggattatccgctc
tgggccgtaggctttgtggatgggtctgccggggtggccacggcgctggaggctgtggcg
gccctgccacgaggcatggtggtctttcaggggctggattgcggcatggaggatgagtgg
tggaaccagcttcctcccacccatccacaggccctgtttcgtgaattcctgtcccgggcc
gggataaatcgggcggatattgccatatggggatatccgctgcggccggagcgggaaaat
cttttccagcatgtcatgttgccagaggcaggcattgcctgctgggggcagccggtgggt
gatgtccgtccttctggcatcagtctgctgccagcagcggattcgcagcaggaagcgcag
gccattgccctgatcctgcgggacgtggccagccagccggggcgctccggtgctcttgtg
acgccggatcgtggtttggccgaccgtgtccgggcggagcttctgcgttttggcatccat
gcggatgatagtgcaggagagccgctggtccgtacccctgcggccgtattcctgcggctg
atcgcccaggccgtgacggcccggttcagcccggtggcattgctgtccgttctcaagcat
ccgctggcagctctgggggggagccccggccgtgcccgggccagtgcccgccttctggaa
aggcggctgctacgggggccggctccccagccggggatggatggactgcgccatgctctt
gaggctttgcaggaggcgcagcagacggataatggctatcaggctgatgcaccagacagc
ccggaacgcctcgcaatatttctggacaggatggaagaagcgttcaggcccctgctgggg
ctggagtcaaccgcccgtgtgccagagcttctggctgctcttctggagacagccgaacag
ctcgcagcggtggagggtgaggggtacgaggctgaccagccccgccctgggtcccgcctt
tggctgggggaagatggcggggccctgtcccggcatttcgtggagctgatgagccatacg
ggggacttgccaccccagcccctgagagcactggaggggtttctgacgtccagcatggcg
ggcaagactttgacagggctgcggggctaccaggggggtgtggaactcgcccatccccga
atctccatctatggcgtgctggaagcccgcctgctggcttttgataccgtcattctggga
gggctgaatgaaggcagctggcctcccgcagcggaatccggcccgtggatgagccgcccg
atgcgccagcgtgtcggcctgccgtcaccggagcggcggattggtgcacaggcgcatgac
tttgtatctgctgccctgtcgtcggagcaggtcatcctgtccaatgcccagcggcgggaa
gggtcacccgccgtcccggcccggtggctgatgcgcctttcagcgtttctggaagggagg
cagatcacgcttcccgttcacccggcattggcgtggcagaccatgctggacatgcctgcc
ggggaggcaaagcccgtagctccccccaagccacggcctcccctgtctctgcgcccccgg
cggctgagcattacccagctggatacgctcaagctggacccctacaccatctatgcccgt
catgtgctggggctgaaggttctggccccgctggaagaaggggcggaacacgccgattac
gggaagatcgtccatacggctctggagcgcatgatcagggagcatcccggtacatggccg
gcccatgcggcacagattctgcaccgtcattttgatgatgcccttgatgaggccctggtg
aatccggctcttgccagctggtggcggcctcgcctgcatcgtattgccgactgggtactg
gcgcaggagcactggcgtcatgtggggcggctgaactgtacgtctcatacagaggtctct
ctggcatatacgctacggggcctgccgggtggtgacttccatattacaggacgggccgac
cggattgatctgtggaatacgccggggcaggaggacaccacggggcgcatccttgattac
aagacaggaacaccccctgaaagcaacgaggtgatcgcaggctggtcatcccagctggtg
ctggaggctgcctttctgaaagagggtgctttcgaaggcctgcctgccgtggaaacggac
gcgttggcctattggaaactgagcggcggagaggaacccggcaaggaagtggtcattccc
tccgtgaaggcaaaagtgacgctgggtgatctggttggcccggctcttgagcagctgcgg
actcttctgacggattatgacgatccatcccggccttaccggtctcagccatgggcaggg
aaagagcaccgttacagcgattacacccagcttgcccgtgtggcggaatggcgtctggca
ggagacgatgaagaatga
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