Parasaccharibacter sp. TMW 2.1888: DTQ13_06295
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Entry
DTQ13_06295 CDS
T08091
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
parz
Parasaccharibacter sp. TMW 2.1888
Brite
KEGG Orthology (KO) [BR:
parz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
parz03032
]
DTQ13_06295 (topA)
03400 DNA repair and recombination proteins [BR:
parz03400
]
DTQ13_06295 (topA)
Enzymes [BR:
parz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
DTQ13_06295 (topA)
DNA replication proteins [BR:
parz03032
]
Prokaryotic type
DNA Topoisomerases
DTQ13_06295 (topA)
DNA repair and recombination proteins [BR:
parz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
DTQ13_06295 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
HC2
Toprim_4
DUF5397
Motif
Other DBs
NCBI-ProteinID:
UPO80643
LinkDB
All DBs
Position
complement(1368613..1371339)
Genome browser
AA seq
908 aa
AA seq
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MKNVVVVESPAKAKTINRYLGSDYTVIASFGHVRDLPPKDGSVRPDENFAMSWQTDDRGS
KQIATIAKALKGASKLILATDPDREGEAISWHVRSALEEKKLLKDIEVERVTFNEITKNA
IAAAMKAPRTLDRPLIDAYLARRALDYLVGFTLSPVLWRKLPGSRSAGRVQSVALRLICE
REAEIEVFKPREYWSVEGLFTTPAKADFTAKLTHLEGRKLDQFALTNEDMAHRARDLVRS
SALSVRKIERKRTRRNPAPPFTTSTLQQEASRKLGMSAQTTMRTAQQLYEGVDLNGETFG
LITYMRTDGVTMASEAVQAIRSHISSSFGKDYCPGKPRSYTTKAKNAQEAHEAIRPTDVS
RTPSSVASVLTADQKRLYELIWKRSVASQMQSAELDQTAVTIGDEQEQTLLRATGSIIAF
DGFLKLYIEGHDDKEKGGDDDQNRLLPAMKEGDQLGTKDVTAEQHFTQPPPRYSEASLVK
KMEEIGIGRPSTYASILSVLRDRNYVRLDARRFVPEDRGRLVTAFLTSFFQRYVDTGFTA
SLETQLDDISDGRADWHDVMSAFWNDFSATVAKTKDLKISDVIDALDQDLGNHFFPPRPD
GSDPRSCPSCTDGRLGLKLGRHGAFLGCSNYPECRVTRPLAVDNGEETALPDGMRLLGHD
PATGEDITLRRGPYGLYVQRGEPDPEDRKAKPKRATIPKDRNGETLTLEEAIGLLSLPRE
VGPHPETGEMITAGLGRFGPFVKMGSIYGTLSKDDDVLTIGLNRAVDALAKKLASIRTLG
THPKDGEVVMVRKGRFGPYVQHGQTIATLPKGDSMDDVTLEEALTLLDEKGKPLKGGRKT
TTKKTAAKKTTTRKTTTAKSTTRKTATKKAATGKATSRAKTTKSGTTKTGSRSKTSPEAP
ISKDDLPF
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
gtgaagaatgttgtggttgtagaaagccctgccaaggcaaagaccatcaaccgttatctc
ggcagcgattataccgtcatcgcctccttcggccatgtgcgggaccttcctcccaaggat
ggaagcgtgcgccctgacgagaatttcgccatgtcgtggcagaccgatgatcgtggctcg
aaacagattgccaccattgccaaggctctcaaaggggccagcaaactgattctcgccacc
gacccggacagggaaggtgaggccatctcgtggcatgtccgcagtgccctcgaggaaaaa
aagctcctcaaggatattgaggtcgagcgggtcaccttcaacgagatcaccaaaaacgcc
atcgctgcggccatgaaggccccccgtacgctggaccgccccctgattgatgcctatctg
gcccgccgtgcgctggactatctggtcggcttcaccctgtctcccgttctctggcgcaag
ctgcccggcagccgcagtgcagggcgtgtgcagtctgtcgccctgcggctgatctgcgaa
cgggaagcggaaatcgaggtcttcaaaccccgggaatactggagtgtggaaggtctcttc
acaactcccgccaaggcggacttcaccgcaaaactgacccatcttgaaggcagaaaactc
gaccagttcgccctgaccaatgaggacatggcccacagggcccgtgatctggtccgctcc
tccgccctcagcgtacggaagatcgagcggaagcggacacgccgcaatccggcaccgcct
ttcaccacctccaccctccagcaggaagcctcccgcaagctgggcatgagtgcacagacc
accatgcgcaccgcccagcagctttatgagggtgtggacctgaatggcgagacgttcggc
ctgatcacctacatgcgtaccgatggcgtcaccatggcctcggaggccgtgcaggccatc
cgctcccatatcagctcatcctttggcaaagattactgcccgggcaagccacgctcctac
accacgaaggcaaaaaacgcacaggaagcccacgaggccatccgccctaccgatgtgtcc
cgtacaccttcttctgtcgcctccgtgctcacggcggaccagaaacgcctttatgagctg
atctggaagcgctccgttgcttcacagatgcagtctgccgagctggaccagacagccgtc
accatcggtgatgaacaggagcagaccctgctgcgggccaccggctccatcatcgccttt
gacggctttctgaagctctatatcgaaggccatgatgacaaggaaaaaggcggggatgat
gaccagaaccgccttctccccgccatgaaggaaggcgaccagctgggcacgaaggacgtg
acagccgaacagcacttcacccagccaccgccccgctattccgaagcatcactggtcaag
aagatggaagaaatcggcatcgggcggccttccacctatgcctccatcctcagcgtcctg
cgggaccgcaattatgtgcgccttgatgcccgacgcttcgtgccggaagacagggggcgg
ctggtcacggcttttctcacctctttcttccagcgttatgtagatacaggcttcacggcc
tcgctggagacgcagctggatgacatctcggatggccgggctgactggcatgatgtcatg
tccgccttctggaacgacttctcggccacggttgccaagacaaaagacctgaaaatctct
gatgtcattgatgcgctggaccaggacctcggcaaccatttcttcccaccccgaccggat
ggcagtgatccacgcagctgcccgtcctgcactgatggacggctgggcctcaagctgggg
cggcatggagccttcctgggatgctccaactatccggagtgccgtgtcacccgccccctg
gcggttgataatggcgaggagactgccctaccggacggtatgcgcctgcttggccatgac
cctgccacgggcgaggacatcaccctccgtcgtgggccttacgggctgtatgtccagcgt
ggcgagccggaccctgaagacaggaaggccaaaccaaaacgggccaccatccccaaggac
cgtaacggcgaaacgctcacccttgaggaagccatcggccttctctccctcccccgtgag
gttggcccccacccggaaacgggcgagatgatcacggccggtcttggccgtttcggaccg
ttcgtcaagatgggcagcatctacggcacgctcagcaaggatgatgacgtgctgaccatc
ggcctgaaccgggccgttgatgctctggccaaaaagctggcttccatccgcacgttgggt
acgcaccccaaggatggtgaggtcgtcatggtccgcaagggacgttttggtccctatgtg
cagcatggccagaccattgccactctccccaaaggggactcgatggatgacgtcacgctg
gaagaggccctcaccctgctggatgaaaaaggcaaaccgctgaaaggtggccgcaagaca
accacgaaaaaaacggccgccaaaaagaccacgaccagaaaaaccactacggcgaagagc
acgaccagaaaaacggccaccaaaaaggcagcgacagggaaggcaaccagcagagccaaa
acgacaaaaagcggaaccacaaaaaccggcagccgcagcaaaacctcaccagaggcgccc
atcagcaaggatgaccttcctttctga
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