Parasaccharibacter sp. TMW 2.1888: DTQ13_06460
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Entry
DTQ13_06460 CDS
T08091
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
parz
Parasaccharibacter sp. TMW 2.1888
Pathway
parz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
parz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DTQ13_06460 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
parz03019
]
DTQ13_06460 (pnp)
03016 Transfer RNA biogenesis [BR:
parz03016
]
DTQ13_06460 (pnp)
Enzymes [BR:
parz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
DTQ13_06460 (pnp)
Messenger RNA biogenesis [BR:
parz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DTQ13_06460 (pnp)
Transfer RNA biogenesis [BR:
parz03016
]
Prokaryotic type
tRNA degradation factors
DTQ13_06460 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
OB_RRP5_4th
S1_RRP5
BioW
DUF4410
KH_2
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
UPO79969
LinkDB
All DBs
Position
1406291..1408441
Genome browser
AA seq
716 aa
AA seq
DB search
MFDNYFRKEIEWAGRPLVLETGKIARQADGAVVVTYGDTVVLCTAVGAKTVKPGQDFFPL
TVNYQEKAYAAGKIPGGFFKREGRPSEHEVLSSRLIDRPIRPLFPDNFRNEVQVVATVLS
HDMENDPALVALIGCSAALTLSGIPFFGPVGAARIGHIDGKFVVNPTLSQVKDSALDLVV
AGTSEGVLMVESEAQELSEDEMLEAVMLGHTAFQPVIDAIIDLAESAARAPWDLPEVSKE
EVALRKRVDKVGNKLIAEAYKERHKQARVEKVAAAREKIVATLEEEGFDAELAKPMIKDL
EAQVVRGTILKTGIRIDGRDTKTVRPIMAEVGVLPRSHGSALFTRGETQALVVATLGTGQ
DEQVIDALEGEYRSRFMLHYNFPPFSVGECGRMGSPGRREIGHGKLAWRAINPLLPSKED
FPYTLRVVSEITESNGSSSMATVCGTSLSLMDAGVPMPRPVAGIAMGLIKEERGHAVLTD
ILGDEDHLGDMDFKVAGTSEGVTALQMDIKITSITPEIMKVALEQAREGRLHILGEMSKA
LSEGRSDVAGNAPKITTMTVPVAKIRDVIGSGGKVIREICEYSGAKVDIGDDGVIKIAAA
SDEQAQKAISRIEGIVAEPEMGRIYDGKVVKTADFGAFVNFLGPKDGLVHISELTDGRVA
KTTDVVKQGDAVKVKVIGFDDRGKVKLSMRVVDQETGADITESVGAKPGRPRRDAE
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgtttgacaattatttccgcaaagaaattgaatgggccggtcgtccgctggtgcttgag
acgggcaagattgcccgtcaggctgatggggccgttgtggtcacctatggtgatacggtc
gtgctctgtactgccgttggtgccaagactgtgaagccggggcaggatttctttccgctg
accgtgaactatcaggagaaggcctacgctgcaggcaagattcccggcgggttcttcaag
cgggaaggccgcccgtccgagcatgaggtgctgtcctcccgtctgatcgaccggccgatc
cgtccgcttttcccggacaatttccggaatgaggttcaggtcgttgccacggtcctcagc
catgacatggaaaatgatccggccctggtggctctgattggctgttccgcagcgctgaca
ctgtccggtattcccttcttcggtccggttggggctgcccgtatcggtcacattgatggc
aagtttgttgtcaacccgaccctcagccaggtgaaggacagtgcgctggacctcgtggtg
gccggtacgtccgagggtgtgctgatggttgagtccgaggcgcaggagctctccgaggat
gagatgctcgaggctgtcatgctgggtcatacggctttccagccggtgattgatgcgatc
atcgacctcgcagaatcggctgcccgtgccccgtgggacctgccggaggtctccaaggaa
gaggtcgccctgcgcaagcgtgtggacaaggtgggcaacaagctgattgccgaggcctac
aaggaacgccacaagcaggcccgtgtggagaaggtcgccgcagctcgcgagaagatcgtg
gccacccttgaggaggaaggctttgatgccgagctggccaagccgatgatcaaggatctg
gaggcacaggttgtccgtggcaccatcctgaaaacgggcatccgcatcgatggccgtgac
acgaagacggtgcgtcccatcatggctgaggttggtgtgctgccccgctctcatgggtct
gcccttttcacccgtggcgagacgcaggcgctggttgtcgccaccttggggacaggtcag
gatgagcaggtgattgatgcgctggagggggaataccggtcccgcttcatgctgcattac
aacttcccgccgttctccgttggtgagtgtggccgcatggggtctccgggccgtcgtgag
atcggacatggcaagctggcatggcgtgccatcaatccgctcctgccgtccaaggaagat
tttccgtatacgctgcgtgtcgtttccgaaattacggaaagcaacggctcttcctccatg
gctacggtttgtggaacgtccctgtccctgatggatgccggcgtacccatgccgcgcccg
gtggcgggcattgccatgggccttatcaaggaagagcgtggccatgctgtcctgacagat
attcttggggatgaggatcaccttggggatatggacttcaaggttgctggtacgtccgag
ggtgtgaccgctctccagatggacatcaagatcacttccatcacgccggaaatcatgaag
gtggcgctggagcaggcccgtgaaggccgtctgcacattcttggtgaaatgagcaaagcc
ctctccgagggacgctccgacgtggctggcaatgcaccgaagatcacgaccatgaccgtt
cctgttgcgaagatccgtgatgtgatcggatcgggcggcaaggtcattcgtgagatttgt
gaatattctggtgccaaggttgatatcggggatgacggcgtcatcaagattgctgccgcc
agtgatgagcaggcccagaaggccatcagccgcattgagggcatcgtggcggaaccggag
atgggacgcatctacgatgggaaggttgtcaagacggccgacttcggtgcgttcgtgaac
ttccttggccccaaggatggtctggttcatatttccgaactgacggatggtcgggtcgcc
aagacaacggatgttgtcaagcagggtgatgccgtcaaggtcaaggtcattggttttgat
gatcgtggcaaggtgaagctttccatgcgtgtcgtggaccaggagactggtgcggacatt
acggagagcgttggcgcaaagccgggtcgccctcgtcgtgatgcggagtaa
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