Parasaccharibacter sp. TMW 2.1888: DTQ13_08165
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Entry
DTQ13_08165 CDS
T08091
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
parz
Parasaccharibacter sp. TMW 2.1888
Pathway
parz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
parz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DTQ13_08165 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
parz03400
]
DTQ13_08165 (mfd)
Enzymes [BR:
parz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DTQ13_08165 (mfd)
DNA repair and recombination proteins [BR:
parz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DTQ13_08165 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
Cas3-like_C_2
RecG_dom3_C
AAA_16
UB2H
SecA_DEAD
AAA_30
Motif
Other DBs
NCBI-ProteinID:
UPO80243
LinkDB
All DBs
Position
1813138..1816632
Genome browser
AA seq
1164 aa
AA seq
DB search
MPVDRSAVASFGPTVWGVPDGAVAFLLRQRLAEHEGTLVHVAHDDAALASLADMLGWLMP
EVTVLRFPAWDCLPYDRISPNPSIVAERAATLSHLLEPRPKTGRIVLTTIHAMLQRVPPR
EAFAGQTIHVKVGDTLDATSLAERLVGNGYSRVDTVMERGEFAMRGSIFDLYPADSGEPV
RMDLFGDEVDNIRSFDAATQRSTDQRTEFSLTPVSEYALDKPSLSRFQTGWRDVFGVGAM
EDVLYRQLLEGRRASGAEHYLPLFHDGDGQHMETLLDYLPDAALSFERDTPEILTARLDM
IADHYQARCAAGHEGELPYRPLPPHRLYLNRHGWDGMLKGHPTVLLSPFAQPDGAEGVDA
GYRPGPVFASMGGAGREGVFHQFSTHVQDWAKQGRRTYLTAWSNGSRERISSLLRDHDIP
CESFDDWAQAAGMARGAVGLVVLGMERGFTGERLAFVSEQDLLGERLARPPRRRRKGNDF
ITQIGEISEGDLVVHEEYGIGRYVGLETVREGRVAHDYLSILYDGEQRLLLPVENIDLLS
RFGSEQGVVQLDRLGGSSWQARKAKMKTRLREMAGELIRTAAARAMKEAPIMAPAEGMWD
EFCARFPFMETEDQSRAIADVLEDLSSGKPMDRLVCGDVGFGKTEVALRAAFVAAMSGMQ
VAVVVPTTLLARQHYIGFRKRFEGLPVKVEQLSRMVTAKEATKVREGLADGTVDIVIGTH
ALLSKAVSFERLGMLIIDEEQHFGVSHKEKLKALREDVHVLTLSATPLPRTLQLSLSGVR
EMSLIATPPTDRLSVRTFITPFDRVMIHEAIQRERFRGGQVFCVVPRLTDMRHMADRLRE
IVPDARITEAHGRLTPTELETVMTEFSEGKYDILLSTNIVESGLDMPRVNTIIIHRADMF
GLGQLYQLRGRVGRAKQRGYAYLTWPQTHVLSASSVKRLEIMQTLDSLGAGFTLASHDLD
LRGAGNLLGDEQSGHIKEVGIELYQQMLQDAVTDLRRMRNEGEEEDTGWTPNIILGLPVL
LPEDYVKDLPVRLGLYRRIAALKDEADVDAMRVELVDRFGPLPQEVENLLDVVMIKKLCR
ETGVERLEAGPKGMVLQFRRNRFGNPDGLIRWVARNEKAGVKIRPDHKLAMVREMTNAVR
ISMARKILASLTKLLEKVRPAEAG
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atgcctgttgatcgttctgccgttgcgtcctttggtccgacagtctggggggtgcctgat
ggggcggtggcattcctgctccgtcagcgtctggcggaacatgaggggacgcttgttcat
gtggcacatgatgacgctgccctggcgtctctggcggacatgctgggctggctgatgccg
gaagtcaccgtcctgcgctttccggcatgggactgtctgccttatgaccggatttccccc
aatccttccatcgtggccgagcgtgccgccacgctgagccaccttctggagccacggccc
aagacgggccgcatcgtgctgacgaccatccatgccatgctccagcgtgtgccgccccgt
gaggcctttgcggggcagaccatccatgtgaaggtcggtgatacgctggatgcgaccagt
ctggcggaacggctcgtgggcaacggctacagccgtgtggatacggtgatggaacgtggc
gagttcgccatgaggggcagcattttcgatctttaccccgctgattccggggagcctgtc
cggatggacctcttcggggatgaggtggacaatatccgcagttttgatgccgccacccag
cggtccacggaccagcggacggagttcagcctgacgccggtttcggaatatgcgctggac
aagcccagcctgagccgcttccagacgggctggcgggatgtgttcggcgtgggagcgatg
gaggatgttctctaccgccagcttctggaaggacgcagggccagtggagcagagcattat
ctgccactgttccatgacggcgacggccagcatatggaaaccctgctggattatctgccg
gatgccgccctgagtttcgaacgggacacgccggaaatcctgacggcacggctggacatg
atcgccgaccattatcaggcccgctgtgccgccgggcatgagggggagctgccctatcgg
cccctgccaccgcaccggctctatctgaaccgtcatggctgggacgggatgctgaagggt
caccccaccgtcctgctgtcacctttcgcccagcccgatggcgcagaaggcgtggatgcc
gggtacaggccgggtccggtctttgccagcatgggcggtgccggacgggaaggggtcttc
caccagttctccacccatgtgcaggactgggcgaagcagggacggcggacctatctgacg
gcctggagcaacggctcccgggagcggatcagcagcctgctgcgggaccatgatattccc
tgcgagagtttcgatgactgggcgcaggcggcgggcatggcccgtggggctgtcgggctt
gtcgtgctgggcatggaacggggcttcaccggggagcgtctggccttcgtgtccgaacag
gacctgctgggggaacgtctggcccgtccgccccggcgcaggcgcaagggcaatgacttc
atcacgcagatcggcgagatttcagagggcgatctcgtcgtgcatgaggaatacggcatt
ggccgttatgtcgggttggagacggtgcgggaagggcgtgtggcccatgattatctctcc
atcctgtatgatggtgagcagcggcttcttctgcccgtggaaaatattgatctgctgagc
cgtttcggctccgagcagggggtggtgcagctcgaccgtctgggcggcagctcgtggcag
gcccgcaaggcgaagatgaagacccgcctgagggaaatggccggagagctgatccgcacg
gcggcggcccgtgccatgaaggaagctcccatcatggccccggctgaagggatgtgggat
gaattctgcgcccgtttccccttcatggagacggaagaccagtcacgggccattgcggac
gttctggaggacctgagcagtggcaagccgatggaccggctcgtctgcggtgatgtgggc
ttcggcaagacagaggtggccctgcgggcagctttcgtggcggccatgtccgggatgcag
gtggcggtggtcgtacccacgacccttctggcccggcagcattacatcggcttcaggaag
cggttcgaggggctgcccgtgaaggtggagcagctttcccgcatggtcacggccaaggaa
gccacgaaggtgcgggaagggctggccgatggaacggtggacattgtcatcggcacccat
gcgctgctctcgaaagccgtgtcgttcgaacggctgggaatgctcatcattgacgaggaa
cagcatttcggcgtgtcccacaaggagaagctgaaggccctgcgggaagacgtgcatgtg
ctgacgctgtccgccacgcccctgccacggacgcttcagctgtccctttccggcgtgcgg
gaaatgagcctgatcgccaccccgccgacggaccgtctgtccgtacgcaccttcatcacg
ccttttgacagggtgatgattcatgaggccatccagcgggaacgcttccggggagggcag
gtcttctgcgtggtgccccgtctgacggacatgcggcacatggccgaccggctgcgggag
atcgtgcccgatgcccgcatcacggaggctcatggccgactcactcccaccgagctggaa
acggtgatgacggagttctcggaggggaaatacgacatcctgctttccaccaacatcgtg
gagagtgggctggacatgccccgggtcaacacgatcatcattcatcgggcggacatgttc
ggccttgggcagctttaccagctgcggggccgtgtggggcgggccaagcagcggggctat
gcctatctgacctggccgcagacgcatgtcctgtcggcttcatccgtcaagcggctggag
atcatgcagacgcttgattcccttggggcgggcttcacgctggcatctcatgaccttgac
ctgcgaggggcaggaaatctgttgggggatgagcagtccggccatatcaaggaggtggga
atcgagctgtaccagcagatgcttcaggacgccgtgacggacctgcgccggatgaggaac
gaaggcgaggaggaagatacgggctggacgccgaacatcatcctcggcctgccggtgctg
ctgccggaggactatgtgaaggacctgcctgtccgtcttggcctgtaccgccgcattgcc
gccctgaaggatgaggcggatgtggacgccatgcgggttgaactggtggaccgtttcggt
cctctgccgcaggaggtggagaaccttctggatgtcgtgatgatcaagaagctctgccgt
gagacgggcgtggagcggctggaggcaggcccgaaaggtatggtcctccagttccgcagg
aacaggttcggcaaccctgatggtttgatccgctgggttgcccgtaatgagaaggccggt
gtgaagatacggcctgaccacaagctggccatggtgcgggaaatgaccaatgccgtgcgt
atcagcatggcccggaagattctggcttctctgaccaagctgctggagaaggttcgcccg
gccgaggcaggctga
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integrated database retrieval system
