Parasaccharibacter sp. TMW 2.1888: DTQ13_08440
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Entry
DTQ13_08440 CDS
T08091
Name
(GenBank) ATP-dependent helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
parz
Parasaccharibacter sp. TMW 2.1888
Pathway
parz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
parz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DTQ13_08440
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
parz03019
]
DTQ13_08440
Enzymes [BR:
parz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DTQ13_08440
Messenger RNA biogenesis [BR:
parz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DTQ13_08440
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
Helicase_C_2
NACHT
AAA_16
Yop-YscD_ppl_2nd
Motif
Other DBs
NCBI-ProteinID:
UPO80290
LinkDB
All DBs
Position
complement(1872956..1874113)
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AA seq
385 aa
AA seq
DB search
MTQTDFTDLGLSDELAQAARKAGMARPTPIQQQGIPPLLAGRDVLLPGQTGTGKTAAFVL
PALQKLASLKQDGTAGSIPRVLILEPTRDLAMQTAGVCRQLGRQLPLRTRVICGGVPRDQ
QARSLEQGADIIVATHGRLLDFVEKGELSLEHIIYLVLDEADRLLDEEFSASMTALVPYI
ADRPQTIFCSATLPEPVMALAKQVTKDPVRVEPGEEEVTPRRIRQQALFITEAQKDTLLL
TLLERSGAQVKDGTGRSIIFTKTKQKADSVAKLLRKTGYRAIALHGGQTQGDRKKTLDRY
QNQTGSILVTTDIAARGLDIDDIQLVVNMDLPQTPELYIHRIGRTARAGKQGRAVTFATL
EERTRLRDIEKHIQYRIRIITTETL
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgacacaaacagattttacagacctcggcctttcagacgagctggcacaggccgcccgg
aaagcaggcatggccagaccaacccccatacagcagcagggcatccccccccttctggcg
gggcgtgacgttctcctgcccggccagaccggcacaggcaagacggcagctttcgtcctg
cccgccctccagaaactggccagcctcaagcaggacggaactgccgggtccattccacgg
gtcctgatcctagagccaacccgtgacctcgccatgcagacagccggggtctgccgtcag
ctgggccgtcaacttccccttcgcacgcgtgtcatctgtggcggcgtgccccgtgaccag
caggcacgctcactggaacagggagccgacatcatcgtcgccacgcatggccgtcttctg
gacttcgtggagaaaggtgaactgtcactggaacacatcatctatctggtgctggatgaa
gccgaccgtcttctggatgaagaattctccgccagcatgacggctctcgtgccctacatc
gccgatcggccccagaccatcttctgttccgccacgctgccggaacctgtcatggcactg
gcaaaacaggttacgaaagaccccgtgcgggtggaacccggcgaggaagaggtcacgcca
cggcgcatccgccagcaggccctgttcatcaccgaggcgcagaaagacaccctgctcctg
acacttctggaacggtcaggagcacaggtaaaagacggaacgggtcgaagcatcatcttc
acgaagacgaagcagaaagccgattccgtcgcaaaactcctgagaaaaaccggatacagg
gccattgccctgcatggcgggcagacgcagggagaccgcaaaaagactctggaccgctac
cagaatcagaccgggtccatcctcgtgacaacggacattgccgcccgcggacttgatatt
gacgacatccagctcgtcgtgaacatggacctgccccagacgccagaactctacattcac
cgcatcggccggacagcccgtgcgggaaagcaggggcgggccgtcacgttcgccacgctg
gaagaacggacccgcctgcgggatattgagaagcacatccagtaccgcatccgcatcatc
acgacggaaacgctatag
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