Pyrobaculum arsenaticum: Pars_1936
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Entry
Pars_1936 CDS
T00503
Name
(GenBank) ribosomal RNA-processing protein RRP4
KO
K03679
exosome complex component RRP4
Organism
pas
Pyrobaculum arsenaticum
Pathway
pas03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pas00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Pars_1936
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pas03019
]
Pars_1936
Messenger RNA biogenesis [BR:
pas03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
Pars_1936
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
Pars_1936
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_6
ECR1_N_2
RRP4_S1
RRP40_S1
KH_1
S1
ECR1_N
KH_KhpA-B
Motif
Other DBs
NCBI-ProteinID:
ABP51483
UniProt:
A4WM66
LinkDB
All DBs
Position
1739948..1740646
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AA seq
232 aa
AA seq
DB search
MYFVTPRQLIFPGDVIATADKKVEGPVYLDNGRYRSLVVGLVEFREDSVVIVPLEGTYRP
KKGDVVVGYVTDVLATGWEVDVRSFMPAYLPVSEALHKHVDLETTPLTTFLNVGDVIVAK
VKDVDLTDEYPIVLTLREEKVGKVESGTVVDIAPVKIPRVIGKKGTMLNTLLELGCDIVV
GQNGRIWIKCGDPRDEVFLASLIRKIELESHVMGLTDRVKSEIEKYKESKQK
NT seq
699 nt
NT seq
+upstream
nt +downstream
nt
atgtacttcgtaactcccagacaactgatatttccgggagacgtaatcgcgacggcggac
aagaaagtggagggtcccgtgtatctagacaacggccggtacagaagtctagttgtgggg
cttgtggagtttagagaggactccgtggtgatagtccctcttgagggcacttaccggccg
aagaaaggcgatgtggtggtgggctacgttaccgacgtcttggccacaggctgggaagtg
gatgtgaggtccttcatgccggcgtacctccccgtgagcgaggctctccacaagcacgtg
gatttggagactactcctcttaccacgttcctcaatgtgggggatgtaatcgtggcaaag
gtaaaggacgtagacctaaccgacgagtacccaattgtgttgaccctccgcgaagagaaa
gtcggcaaggtggagagcggcactgttgtcgatatagcacctgtaaaaataccgcgagtc
ataggtaagaagggcaccatgctaaacacgctactggaactaggatgcgacatcgtagtg
gggcaaaatggccgtatttggatcaagtgtggcgacccccgagacgaagttttcctagcc
tctctcatcagaaaaatcgagctggagagtcacgtcatgggcctaaccgacagggtaaag
tcagaaatagagaagtacaaggaaagcaaacagaagtaa
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