Peribacillus asahii: BAOM_4572
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Entry
BAOM_4572 CDS
T06700
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
pasa
Peribacillus asahii
Pathway
pasa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pasa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
BAOM_4572 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pasa03019
]
BAOM_4572 (rnr)
03016 Transfer RNA biogenesis [BR:
pasa03016
]
BAOM_4572 (rnr)
Enzymes [BR:
pasa01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
BAOM_4572 (rnr)
Messenger RNA biogenesis [BR:
pasa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
BAOM_4572 (rnr)
Transfer RNA biogenesis [BR:
pasa03016
]
Prokaryotic type
tRNA degradation factors
BAOM_4572 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
OB_HELZ2
S1_RRP5
OB_Dis3
OB_RNR_1st
MarR_2
TFIIE_beta
Motif
Other DBs
NCBI-ProteinID:
AZV45152
UniProt:
A0A3T0KXV7
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All DBs
Position
complement(4306041..4308398)
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AA seq
785 aa
AA seq
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MEEQIDQHIERLLSYMKEEAYKPLTVQELEEALGIEDSADFKNFVKALVKMEEKGLVIRT
RSNRYGLPQKMNLIRGKLSGHAKGFAFVTPEDEPGADDIFIPPNETKSAMHGDTVMVRVS
TETSGSRREGTVIRILERGVTEIVGTYSESKHFGFVIPDDKKIASDIFIPKQVNGGAIEG
HKVVVKLTSYPEGRTSAEGEVIQILGHKNDPGVDILSVIHKHGLPLEFPQEVMDQANAVP
DTIAESEIGNRRDLRNDVIVTIDGADAKDLDDAVTVTKLDNGNYKLGVHIADVSHYVTEG
SPIDREALERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRFTLSCEMEITPEGEVIQHE
IFESVIKTTERMTYSDVNKILLDQDEELLARYEPIIPMFQEMEKLAEILRRKRMNRGAID
FDFKEAKVLVDEEGHPSDVVLRERSVAERLIEEFMLAANETVAEHFHWLDVPFIYRIHED
PKPEKLQRFFEFITNFGYLVRGSANEVHPRALQEIIEAVEGKPEEMVISTVMLRSMQQAK
YDPESLGHFGLSTEFYTHFTSPIRRYPDLIVHRLIRTYLIEGKLDPATQEKWDSLLPDIA
DHTSKRERRAVDAERETDELKKAEYMLDKIGEEYDGIISSVTNFGMFVELPNTIEGLVHV
SYMTDDYYRFDERQLAMVGERTGKVFRIGDEISIRVSNVNKEERAVDFEIIGMKVSRPRP
SSGEKRVFKANAGEKKRGRGGRNGRDEGRGGRNSERSSSERKPKKKKKFYENAPSAKRKK
KPKKR
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atggaagaacaaatcgatcaacatatcgagcggcttttatcttatatgaaagaagaggca
tataagccgttaactgttcaagagctagaagaagctctagggattgaagattcagcagat
tttaagaactttgtgaaggcgcttgtcaaaatggaagaaaagggtcttgtcattcggacg
agaagcaatcgctatggcctgccgcaaaaaatgaatttaattcgagggaagttgtctggg
cacgcgaagggatttgcttttgttacacctgaagatgaaccgggtgcagatgatattttc
attccaccaaatgaaacaaagagcgcgatgcacggcgatactgttatggttcgggtttct
acggaaacaagcggttcaagacgagaaggaaccgtgattcgaattcttgaacggggcgta
acggagattgtcggtacgtattctgaaagtaaacattttggatttgtcatcccagatgat
aaaaagattgcaagcgatatctttattccaaaacaagtaaatggcggagctattgaggga
cataaagtagttgtaaaattaacttcttatcctgaagggcgtacaagtgcagaaggagaa
gtcattcaaattcttggccataaaaatgacccaggtgtggacattttatccgtgattcat
aagcatggtttgccattagagtttcctcaggaagtgatggaccaagcgaatgctgtgcca
gatactattgcggaaagtgaaatcggcaatcgccgtgatttacgaaatgacgtgattgta
acgattgatggtgctgatgcgaaagatttggatgatgccgttacggttacgaagctcgat
aatggcaattacaagcttggcgttcatattgccgatgttagtcattatgtaacagaaggt
tcacctattgatcgagaagcgttagaaagagggacaagtgtttatttagtagaccgagtg
atcccgatgattccacatcgtttatcaaatgggatttgttctttgaatccaaaagtcgat
cgttttactttatcatgtgaaatggaaattacacctgaaggggaagtcatacagcacgaa
atttttgaaagtgtaattaaaacgacagaacgaatgacgtatagcgatgtgaataaaatt
ttattagatcaagatgaagaattgcttgcgcgttatgagccgattattccgatgttccaa
gaaatggagaagcttgctgagattctgcgtcgtaaacggatgaatcgcggagccattgac
tttgattttaaagaagcaaaagtgctcgttgatgaagaagggcatccatcggacgttgtg
ctacgcgaacgctctgtagcagaacgattaatcgaagagtttatgttagcagcgaatgag
acagtagcagaacatttccactggttagatgttccgtttatttatcgaattcatgaagat
ccaaagccagagaagttacaacgcttcttcgaattcattacaaactttggttaccttgtt
cgtggatcagcgaatgaagtgcatccacgggctttacaagaaattattgaagcggtggaa
ggcaagccggaagaaatggtcatttctactgtcatgcttcgttcgatgcagcaagcgaaa
tatgacccggaaagcttaggtcactttggtctttctacggaattctatacacatttcaca
tcgccaattcgccgttatccagatttaattgtgcaccgtcttattcgcacgtatttaatt
gaaggcaaattggaccctgctacacaagaaaaatgggattccttgctgcctgatattgca
gatcatacatctaagcgggagcgtcgcgctgtagatgctgagcgcgaaacagatgagctg
aaaaaagcagaatatatgcttgataaaattggcgaagagtatgatggaattattagttct
gttacgaattttggtatgtttgtggagttgccaaacacaattgaagggcttgttcatgta
agctatatgactgatgattattatcgctttgacgaacgtcaactagcgatggtaggggaa
cgaacaggaaaagtgttccgaattggggatgaaatttcgattcgggttagcaatgtaaat
aaagaagagcgtgcagttgattttgaaattatcggtatgaaagtgagtcgtccacgtcca
tcttctggtgagaaacgcgtatttaaagcaaatgcaggagagaaaaagcgcggccgcggc
ggacgaaatggtcgtgatgaaggacgtggaggccggaactctgaacgttcctcgtctgaa
cgaaaaccgaaaaagaagaaaaagttttatgaaaatgcgccgtctgctaagcgcaagaaa
aaaccaaaaaagagataa
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