Candidatus Phytoplasma asteris: QN326_07390
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Entry
QN326_07390 CDS
T10435
Name
(GenBank) Ribonuclease J2 (endoribonuclease in RNA processing)
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
pase Candidatus Phytoplasma asteris
Pathway
pase03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pase00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QN326_07390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pase03019
]
QN326_07390
Messenger RNA biogenesis [BR:
pase03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
QN326_07390
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GFIT
Motif
Pfam:
RNase_J_C
RNase_J_b_CASP
Lactamase_B_2
Lactamase_B_6
RMMBL
Motif
Other DBs
NCBI-ProteinID:
WZX02682
UniProt:
A0ABZ3CE54
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All DBs
Position
complement(656823..658511)
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AA seq
562 aa
AA seq
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MNDIKFFALGGLGESGKNFYVLQINESYFLLDAGLKYPNTALYGIDSMIADYYKLQDIKD
KIKGVFLSSAFETNLGALPYLMKDFDIPVYASYFTMQVLKAHFQSHKINYRNFNLQIVKS
DERLIFDDVAVAFFATSQLIPETLGMVFQTKRGSIVYSGDLKLLHSKNKFFQTNFTRLAQ
LAQPKVLAFLPSCRGAFSTSAHNNDASSFEHKLNNYFSNHLLKSEGIIVIPSLMPDLLKI
QSIVDLACRLNFKITFLGRKSEKIIDIALKKGFLKVPSFNLVELKTLEDSKKHPKLVVFV
LGKHFESLFHLQKMCQKTDTLIHLTPQDLVLLMSKEMAGIAKMQSQTLDLLSRHNIQAHV
LVKDLDACSNDYEKTLKLMLNFLKPQYIIPVMGEYRHQYQVQKIAQSLGFKLNQTFLLEN
GSIWHCDPQKDAFAESNTGVLTEILIDGTPVIGGQDFIMKDRELLAADGVVIVVANVNAK
HKKIVGAPQLVSKGFLADSETSHIFPKLKAIFDEKSEIFLKKKYLKWNDFKKNIRESLVK
FLFKETKKRPIVIPIFISVKSE
NT seq
1689 nt
NT seq
+upstream
nt +downstream
nt
gtgaatgacattaaattttttgctttaggaggactgggcgaaagtggaaaaaatttttac
gtcttgcaaattaacgaatcttattttttacttgatgctggactaaaatatcccaatacc
gctctttatggcatcgattctatgattgctgattattacaaattacaagatatcaaagac
aagattaaaggcgtttttttatcatcagcttttgaaaccaatttgggtgccttgccttac
ttgatgaaagattttgatatccctgtttatgcttcttattttacgatgcaagttctaaaa
gcgcattttcaaagtcataaaattaattaccgcaattttaatctacaaatcgttaaaagc
gatgaaagacttatttttgatgatgtggcagtggctttttttgctacatcgcaattgatt
cctgaaacattgggaatggtttttcaaactaaacgaggtagcatcgtttactctggcgac
cttaaattattgcattctaaaaataaattttttcaaactaattttacaagattagctcaa
ttagcacaacccaaagtacttgcctttttgccttcttgtcgtggggcttttagcacatct
gcgcataataatgatgcatcgagttttgagcacaaattgaataactattttagcaatcac
ttgcttaaatccgaaggtattattgttattccttctttgatgcctgatttgttaaaaatt
caatccatagtggatttggcatgtagacttaattttaaaataacttttttaggtagaaaa
agtgaaaaaattattgatattgctttgaaaaaaggttttttaaaagtgccttccttcaat
ttagtggaattaaaaacactagaagactccaaaaaacatccaaaattagttgtctttgtg
ctaggtaaacattttgaatctttgtttcatttgcaaaaaatgtgtcaaaaaacagacact
ttaattcatttaacgccccaagatttagtgttgttaatgtccaaagaaatggcaggaatt
gccaaaatgcaatctcaaaccctagatcttttgtcacgccacaatattcaagcccatgtt
ttggtaaaagacctagacgcttgttccaatgattatgaaaaaaccctcaaattgatgctt
aattttttaaaacctcaatacattattcctgttatgggtgaatatcgtcatcaatatcaa
gtgcaaaaaattgcccaaagtttaggattcaaactcaaccaaactttcttgttagaaaat
ggcagtatttggcattgtgacccacaaaaagatgcctttgccgaatctaatactggcgtt
cttacagaaattttaattgatggtactcccgttattggtgggcaagattttattatgaaa
gaccgtgaacttttagcagcggatggagttgtaattgttgttgccaatgttaatgctaaa
cacaaaaaaatagtaggtgctccacaattagtaagtaaaggctttttggcagattctgaa
actagtcatatttttcctaagttaaaagctatttttgatgaaaaaagtgaaatttttttg
aaaaaaaagtatcttaaatggaatgatttcaaaaaaaatattagagaatcattagttaaa
tttttattcaaagaaactaaaaaaagacctattgttattcctattttcattagtgttaaa
agtgaataa
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