Candidatus Phytoplasma asteris: QN326_07960
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Entry
QN326_07960 CDS
T10435
Name
(GenBank) DEAD-box ATP-dependent RNA helicase CshA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pase Candidatus Phytoplasma asteris
Pathway
pase03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pase00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
QN326_07960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pase03019
]
QN326_07960
03009 Ribosome biogenesis [BR:
pase03009
]
QN326_07960
Enzymes [BR:
pase01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
QN326_07960
Messenger RNA biogenesis [BR:
pase03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
QN326_07960
Ribosome biogenesis [BR:
pase03009
]
Prokaryotic type
rRNA helicases
QN326_07960
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DbpA
Utp25_C
Cas3-like_C_2
Pro-kuma_activ
Motif
Other DBs
NCBI-ProteinID:
WZX02729
UniProt:
A0ABZ3CDR1
LinkDB
All DBs
Position
708854..710512
Genome browser
AA seq
552 aa
AA seq
DB search
MNTLFEELPILEQTKKALKELNFIDATPIQALVIPEIIKGHDVIGQAQTGTGKTFAFGIP
IIEKIEPKIQKTQSLILCPTRELTLQVYEELKKLLRFYQEIRIAVVYGGESYTKQFRALE
AKPHLIIATPGRAIDHLERGKIDLSALKILTLDEADEMLKMGFQEALETILKKIPEERQT
VLFSATLPPFIKKIASKYQKDTKILQVPVKNIAVNAIEQNYFLVKEVDKAKLLVRLLDLK
KDYSAILFANTKKDVDEITAYLQDKGFLADAVHGDLKQNQRQYVMNNFRKGKIKILIATD
VAARGLDISDIKMVINYDLPHEDEVYVHRIGRTGRAGKKGLAYSLISPRKVSQLKKLEYY
LKEKITLLDIPSVQSIKLQNAKDLEKKLLNIIEKNNEDATPNQLAQKLLETFSSEQIIQG
LLKKFLPKERNYTDILPPKMTTNNSFTRSRFGGESRFGSYGSNNSYGNKSYQRANSNFIE
VVINLGKKDNINPPILLKLLKDHFQIYGKNIGNIKHLTHETIFEVASRFWNQMKSKTNIR
FQNKTLILNKKD
NT seq
1659 nt
NT seq
+upstream
nt +downstream
nt
atgaatactttattcgaagaattacctattttagagcaaactaaaaaagctttaaaagaa
ctcaattttattgatgctactccaattcaggccttagtaattccagaaattataaaagga
cacgacgtaattggacaagctcaaacaggaacaggaaaaacttttgcttttggtattccc
attatcgaaaaaattgaaccaaaaatccaaaaaactcaaagtttaattttatgccccact
agagaattaactctccaagtatacgaagaattaaaaaaattactaagattttatcaagaa
ataagaatcgctgttgtttatggtggtgaatcttacaccaaacaatttagagccctagaa
gctaaacctcatttaattattgctactcctggacgtgcaattgaccatctagaaagaggt
aaaatcgacctctcagcactaaaaattctaactcttgacgaagcagatgaaatgttaaaa
atgggattccaagaagccttagaaacaatcttaaaaaagattccagaagaaagacaaact
gttttattctcagcaactctacctccatttattaaaaaaatagcaagcaaataccaaaaa
gacactaaaatcctacaagttcctgttaaaaacattgcagttaatgcaatcgaacaaaat
tactttttagtaaaagaagttgacaaagctaaattattagtacgtttactagacttaaaa
aaagattattcagctatcttatttgcaaacactaaaaaagatgttgacgaaattacagcc
taccttcaagacaaaggctttttagctgatgcagttcacggcgatttaaaacaaaatcaa
agacaatatgtaatgaataatttccgtaaaggcaaaatcaaaatcttaattgcaactgat
gtagctgcaagaggacttgacatttctgacatcaaaatggtaattaactatgacttacca
cacgaagacgaagtttatgttcaccgtatcggaagaactggaagagctggcaaaaaaggt
ttagcttacagtttaattagcccaagaaaagtaagccaacttaaaaaattagaatactac
ttaaaagaaaaaattactttactagatattccttctgttcaaagcatcaaattacaaaat
gccaaagatttagaaaaaaagctattaaacatcattgaaaaaaacaacgaagacgctact
ccaaatcaattagcacaaaagttattagaaactttttcttctgaacaaattatccaagga
ttattgaaaaaatttttaccaaaagaaagaaattacactgacatccttcctccaaaaatg
actactaacaattcttttaccagatcacgttttggtggcgaatctagatttggttcttat
ggttctaacaactcttacggcaataaatcttaccaaagagcaaatagcaactttatagaa
gtagttattaatttaggcaaaaaagacaatattaatcctccaatattattaaaattatta
aaagaccatttccaaatttatggcaaaaatattggtaatatcaaacacttaactcacgaa
actatttttgaagtagcaagtcgtttttggaatcaaatgaaaagcaaaactaatattcgt
ttccaaaacaaaactttaattcttaacaaaaaagattaa
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