Pseudomonas asgharzadehiana: KSS96_02100
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Entry
KSS96_02100 CDS
T07697
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pasg
Pseudomonas asgharzadehiana
Pathway
pasg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pasg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KSS96_02100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pasg03019
]
KSS96_02100
03400 DNA repair and recombination proteins [BR:
pasg03400
]
KSS96_02100
Enzymes [BR:
pasg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KSS96_02100
Messenger RNA biogenesis [BR:
pasg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KSS96_02100
DNA repair and recombination proteins [BR:
pasg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
KSS96_02100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
ResIII
SNF2-rel_dom
Motif
Other DBs
NCBI-ProteinID:
QXH67753
LinkDB
All DBs
Position
460011..461948
Genome browser
AA seq
645 aa
AA seq
DB search
MHDTLQQVFGYPQFRLGQQETVSAVLAGRSAAAIFPTGSGKSLCYQLSAVLLPHLTLVVS
PLLALMQDQLGFLQRHGISAGSIDSAQSRGQANDVMARARSGELKILMISVERLKNERFR
NFLQSVRISLLVVDEAHCISEWGHNFRPDYLKLPDYQRQFKIPQALLLTATATPKVIADM
QAKFAIAPHDVVTTGFYRPNLNLLVEPVSGADKRRRLVQWMSERANQPSIVYVTLQKTAE
QIAEHLNRNGIQAEAYHAGLLHDKRESIQQRFMGGRCNCIVATIAFGMGIDKSDIRNVVH
FDLPKSIENYSQEIGRAGRDGQPSDCLVLANRDSLNVLENFVYGDTPEQEGIRRVLEDLQ
AARGEGQWEFLLRSLSDHSNIRELPLKTLLVQLELKGVIAPRYAFYAEYRFKYLIEPEAL
LARFSGERQQFVAAIIQVCKRAKTWATVDFDALYQQHNAERSRVVKALDYFQEQGLIELE
SKQMTEVYSLLNTDFDPQLLSAELYTGFKQHEVTEVARIHAMLELFATQHCLGQRLARYF
GDENAPQRCGHCSVCRGHVAHLPAPPSLPPLVDKNFMGLCGDFIHRHHAHTGQLPGAERL
TRFLGGISVPLFTRLKARGISGFAALEDYPYAEVREWAEAHLNDL
NT seq
1938 nt
NT seq
+upstream
nt +downstream
nt
atgcacgacaccctccagcaggtctttggttatccacagtttcgtttgggccagcaagaa
acggtcagcgccgtgctggccggtcgttcggcggccgcgatatttcctaccggctcaggc
aagtccctttgttaccagctatcggcggtcctgctgccgcacctgacgttggtggtgtcg
ccgctgttggcactgatgcaggaccagttgggttttttgcagcgccacggtatctcggcg
ggcagtatcgattcggcccagagccgcgggcaggccaacgacgtcatggcgcgtgcacgt
tcgggcgagttgaaaatcctgatgatttcagtggagcgcctgaaaaacgagcgctttcgt
aacttcctgcaaagcgtgcggatttcgttgttggtggtggatgaggcgcactgtatttcc
gaatggggccacaacttccgtccggactacctgaaactgccggactaccaacgtcagttc
aagatcccacaagcgctgctgctgacggctacagccacgcccaaggtgatcgccgatatg
caggccaagttcgccatcgcgccgcacgatgtggtaaccacagggttctatcggccgaac
ctgaatctattggtcgagccggtcagcggtgcggacaaacgccgacgcttggtgcaatgg
atgagtgagcgggccaaccagccgagcattgtctacgtcaccctgcaaaaaaccgccgag
cagatcgccgagcacctgaaccgcaacggtatccaggccgaggcctatcacgcaggtttg
ctccacgacaaacgagagagtatccagcagcgcttcatgggcgggcgctgcaattgcatc
gttgccaccatcgcgtttggcatgggcatcgacaagagtgacatccgcaatgtggtgcac
ttcgacctgcccaaatccattgagaactacagccaggaaatcggccgcgccgggcgcgat
gggcagccttcggactgcctggtgctggccaaccgcgacagcctcaatgtgctggagaac
ttcgtctatggcgatacgccagagcaggagggcatccggcgcgtgctcgaagacttgcag
gcggcgcgcggcgaggggcagtgggagttcctgctgcgctcgctgtcggatcacagcaat
atccgcgagctgccactcaagacgctgctggtgcaactggagctcaagggcgtgatcgcg
ccgcgctatgcgttttatgctgaatatcgcttcaagtacctgatcgaacccgaggcgttg
ctggcacgattttccggtgagcggcagcagtttgtcgcagcgattatccaagtgtgcaag
cgtgcgaaaacctgggcgacggtggatttcgatgcgctgtaccagcaacacaacgccgag
cgcagccgcgtggtgaaggcgctggattacttccaggagcagggcctgatcgagctggaa
agcaagcagatgaccgaggtctacagcctgctgaataccgactttgacccccagttattg
agcgccgagttatacacaggcttcaagcagcacgaggtgacggaggtggcgcgaattcac
gccatgctcgagctgtttgccactcaacactgcctggggcagcggctggcgcggtatttc
ggcgatgaaaacgcaccgcagcgctgcgggcattgctcggtatgccgggggcacgtcgcg
catctaccggcgccgccgagcctgccgccgcttgtggataaaaatttcatggggctgtgc
ggtgattttatccacaggcatcatgcacacaccggccaactgcccggcgctgaacggttg
acgcgttttctgggtggtatcagtgtgccgctgttcacccggttaaaggcgcgaggcatt
tcgggttttgctgcgctggaggactacccctacgccgaggtgcgcgagtgggccgaggcc
catttgaatgacctgtaa
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