KEGG   Pseudomonas asgharzadehiana: KSS96_05220
Entry
KSS96_05220       CDS       T07697                                 
Name
(GenBank) RNA polymerase factor sigma-54
  KO
K03092  RNA polymerase sigma-54 factor
Organism
pasg  Pseudomonas asgharzadehiana
Pathway
pasg02020  Two-component system
pasg02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:pasg00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    KSS96_05220
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    KSS96_05220
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pasg03021]
    KSS96_05220
Transcription machinery [BR:pasg03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     KSS96_05220
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_IclR HTH_21
Other DBs
NCBI-ProteinID: QXH68331
LinkDB
Position
complement(1159616..1161109)
AA seq 497 aa
MKPSLVLRMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEEGDDFDNAD
PLADNIEQKTNSDVQEPSYQETAPTVDNLEEGDWNERIPNELPVDTAWEDVYQTSASSLP
SNDDDEWDFTTRTSAGESLQSHLLWQLNLAPMSDTDRLIAVTLIDCINNQGYLDETLEEI
LEAFDPELDIELDEIEAVLHRIQQFEPAGIGARSLSECLLLQLRQLPAKTPWLAEAQRLV
TDYIDLLGSRDYSQLMRRMKLKEDDLRQVIELVQSLNPRPGSQIESSEAEYVVPDVIVRK
DNERWLVELNQESVPRLRVNPQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNETL
MKVATQIVEHQRGFLEYGDEAMKPLVLHDIAEAVGMHESTISRVTTQKFMHTPRGIYELK
YFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTVAK
YRESLGIAPSSERKRLM
NT seq 1494 nt   +upstreamnt  +downstreamnt
atgaaaccatcgctagtcctgagaatgggccagcagctgacgatgacaccgcagctgcaa
caggccatccgcctgctccaattgtcgaccctggacctgcaacaggaaatccaggaggcc
ctggagtccaatccgatgctcgaacgccaggaagaaggcgacgacttcgataatgcagac
ccgctggccgacaacatcgagcaaaaaaccaattccgacgtgcaggaaccctcctaccag
gaaaccgccccaacggtggataaccttgaggaaggcgactggaacgaacgcattcccaac
gaactcccggtggataccgcctgggaagacgtctaccagaccagcgcgagcagcctgccc
agcaacgatgatgacgagtgggacttcaccacccgcacctccgccggcgaaagcctgcag
agccatctgttgtggcaactgaacctcgcaccgatgtccgacaccgatcgcctgatcgcc
gtcacgctgatcgattgcatcaacaaccagggttatctggacgagacgctcgaggagatt
ctggaggccttcgaccctgaactggacattgagctggacgaaatcgaagccgtcctgcac
cgcatccagcagttcgagcctgcgggcattggcgcccgctccctgagcgaatgcctgttg
ctgcaactgcgccagctgcccgccaagacaccttggctggctgaagcccagcgcctggtc
accgattacatcgacctgctgggcagccgcgactacagccagttgatgcgccgcatgaag
ctcaaggaagatgacctgcgccaggttatcgaactggtgcaaagcctcaacccgcgcccg
ggctcgcagatcgagtccagcgaagccgaatatgtggtccctgacgtgattgtgcgcaag
gacaacgaacgctggctggtggaattgaaccaggagtcggtgccacgcctgcgggtcaac
ccgcaatatgccggttttgtgcgccgcgccgacaccagcgccgacaacaccttcatgcgc
aaccagttgcaggaagcccgctggttcatcaagagcctgcagagccgtaacgaaaccctg
atgaaagttgccacccagatcgtcgagcatcagcgcggcttcctggaatacggcgacgag
gcgatgaagcctctggtgctgcatgacatcgccgaggcggtaggcatgcacgaatcaacg
atttcacgggtgacgacgcaaaaattcatgcataccccacggggtatatatgagctcaaa
tactttttctccagccatgtcagcacctccgaaggcggcgaatgctcgtccacggcgatc
cgcgcgatcatcaaaaaactggttgccgcggaaaatcagaaaaagccgttgagtgacagc
aagatcgctggtttactggaggcacaaggcattcaggtcgcccgtcgaaccgtcgccaag
taccgcgagtcccttgggatcgcgccttccagcgagcgtaagcgtttgatgtga

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