Pseudomonas asgharzadehiana: KSS96_05220
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Entry
KSS96_05220 CDS
T07697
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
pasg
Pseudomonas asgharzadehiana
Pathway
pasg02020
Two-component system
pasg02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pasg00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
KSS96_05220
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
KSS96_05220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pasg03021
]
KSS96_05220
Transcription machinery [BR:
pasg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
KSS96_05220
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
TrmO_C
HTH_21
Motif
Other DBs
NCBI-ProteinID:
QXH68331
LinkDB
All DBs
Position
complement(1159616..1161109)
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AA seq
497 aa
AA seq
DB search
MKPSLVLRMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEEGDDFDNAD
PLADNIEQKTNSDVQEPSYQETAPTVDNLEEGDWNERIPNELPVDTAWEDVYQTSASSLP
SNDDDEWDFTTRTSAGESLQSHLLWQLNLAPMSDTDRLIAVTLIDCINNQGYLDETLEEI
LEAFDPELDIELDEIEAVLHRIQQFEPAGIGARSLSECLLLQLRQLPAKTPWLAEAQRLV
TDYIDLLGSRDYSQLMRRMKLKEDDLRQVIELVQSLNPRPGSQIESSEAEYVVPDVIVRK
DNERWLVELNQESVPRLRVNPQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNETL
MKVATQIVEHQRGFLEYGDEAMKPLVLHDIAEAVGMHESTISRVTTQKFMHTPRGIYELK
YFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTVAK
YRESLGIAPSSERKRLM
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccatcgctagtcctgagaatgggccagcagctgacgatgacaccgcagctgcaa
caggccatccgcctgctccaattgtcgaccctggacctgcaacaggaaatccaggaggcc
ctggagtccaatccgatgctcgaacgccaggaagaaggcgacgacttcgataatgcagac
ccgctggccgacaacatcgagcaaaaaaccaattccgacgtgcaggaaccctcctaccag
gaaaccgccccaacggtggataaccttgaggaaggcgactggaacgaacgcattcccaac
gaactcccggtggataccgcctgggaagacgtctaccagaccagcgcgagcagcctgccc
agcaacgatgatgacgagtgggacttcaccacccgcacctccgccggcgaaagcctgcag
agccatctgttgtggcaactgaacctcgcaccgatgtccgacaccgatcgcctgatcgcc
gtcacgctgatcgattgcatcaacaaccagggttatctggacgagacgctcgaggagatt
ctggaggccttcgaccctgaactggacattgagctggacgaaatcgaagccgtcctgcac
cgcatccagcagttcgagcctgcgggcattggcgcccgctccctgagcgaatgcctgttg
ctgcaactgcgccagctgcccgccaagacaccttggctggctgaagcccagcgcctggtc
accgattacatcgacctgctgggcagccgcgactacagccagttgatgcgccgcatgaag
ctcaaggaagatgacctgcgccaggttatcgaactggtgcaaagcctcaacccgcgcccg
ggctcgcagatcgagtccagcgaagccgaatatgtggtccctgacgtgattgtgcgcaag
gacaacgaacgctggctggtggaattgaaccaggagtcggtgccacgcctgcgggtcaac
ccgcaatatgccggttttgtgcgccgcgccgacaccagcgccgacaacaccttcatgcgc
aaccagttgcaggaagcccgctggttcatcaagagcctgcagagccgtaacgaaaccctg
atgaaagttgccacccagatcgtcgagcatcagcgcggcttcctggaatacggcgacgag
gcgatgaagcctctggtgctgcatgacatcgccgaggcggtaggcatgcacgaatcaacg
atttcacgggtgacgacgcaaaaattcatgcataccccacggggtatatatgagctcaaa
tactttttctccagccatgtcagcacctccgaaggcggcgaatgctcgtccacggcgatc
cgcgcgatcatcaaaaaactggttgccgcggaaaatcagaaaaagccgttgagtgacagc
aagatcgctggtttactggaggcacaaggcattcaggtcgcccgtcgaaccgtcgccaag
taccgcgagtcccttgggatcgcgccttccagcgagcgtaagcgtttgatgtga
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