Pseudomonas asgharzadehiana: KSS96_12480
Help
Entry
KSS96_12480 CDS
T07697
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pasg
Pseudomonas asgharzadehiana
Brite
KEGG Orthology (KO) [BR:
pasg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pasg03016
]
KSS96_12480
Enzymes [BR:
pasg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
KSS96_12480
Transfer RNA biogenesis [BR:
pasg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
KSS96_12480
Prokaryotic type
tRNA splicing ligases
KSS96_12480
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
TFX_C
Motif
Other DBs
NCBI-ProteinID:
QXH69688
UniProt:
A0ABX8P7H3
LinkDB
All DBs
Position
2711047..2712273
Genome browser
AA seq
408 aa
AA seq
DB search
MQNNTYQLLEVANGKPIKLWTEGVPVEPEARQQLMNTARMPFIFKHLAVMPDVHLGKGST
IGSVIPTVGAIIPAAVGVDIGCGMIAARTTLMAGDLPDNLHGLRCAIEAAVPHGRTRSRK
GRDKGAWEDVPAQADQVWATLHPRFKAITDKYPQLERSNHRQHLGTLGTGNHFVEVCLDE
ANRVWFMLHSGSRGVGNAIGNLFIQLAQADMRQHLANLPDRDLAYFDEGSQHFDDYVQAV
GWAQDFARQNRELMMRAVVQATRQVISKPFEVALEAVNCHHNYVQKERHFGEDILVTRKG
AVSAKKGELGIIPGSMGAKSFIVRGLGNEQSFCSCSHGAGRTMSRTKAKNTFTVADQIRA
TAHVECRKDADVIDEIPMAYKDIDRVMHAQRELVQVLHTLHQVVCVKG
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaacaacacctaccaactgctggaagtcgccaacggcaaaccgatcaagctctgg
accgaaggcgttccggtggagcccgaagctcgtcagcaactgatgaacacggccaggatg
ccgtttattttcaagcacctcgcggtgatgccggatgtgcacctgggcaagggctcgacc
atcggcagcgtgattcccaccgtgggcgcgatcatcccggcggcggtcggggtggatatc
ggctgcggcatgatcgccgcgcgcaccacgctgatggccggcgacctgccggataacctg
catggcctgcgttgtgccatcgaggccgccgtgccccatggccgtacccgcagccgtaaa
ggccgtgacaaaggcgcgtgggaagacgtgccggcccaggccgatcaggtatgggccacg
ttgcatccgcgcttcaaggcgatcaccgacaagtacccgcaactggagcgcagcaaccac
cgccaacacctggggacgttgggcaccggcaaccactttgtcgaggtgtgcctggatgag
gccaaccgtgtctggttcatgttgcacagcggctcgcggggcgtgggcaatgccatcggc
aacctgtttatccagttggcccaggcagacatgcgtcagcacctggccaacctgccggac
cgcgacctggcgtatttcgatgagggcagccagcacttcgatgactacgtgcaagccgtg
ggatgggctcaggattttgcccggcagaaccgcgagttaatgatgcgcgcggtggtccag
gccacgcggcaagtgatcagcaaaccgtttgaagtggcgctggaagcggtgaactgccat
cacaactatgtgcaaaaagagcggcattttggcgaagacatcctggtgacccgcaagggc
gcggtctccgcgaaaaaaggcgagttggggattattccgggctccatgggcgcaaaaagc
ttcatcgtgcgcgggctgggcaacgaacaatcgttctgctcgtgcagccatggtgcgggc
cgcaccatgagccgcaccaaggcgaagaacacctttaccgtcgccgaccagatccgcgcg
accgcccatgtggagtgccgcaaggacgccgatgtgatcgacgaaataccgatggcctac
aaggacatcgaccgcgtcatgcacgcccagcgcgagttggtgcaggtgctgcacaccttg
catcaggtggtgtgcgtcaagggataa
DBGET
integrated database retrieval system
