Pseudomonas asgharzadehiana: KSS96_15455
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Entry
KSS96_15455 CDS
T07697
Name
(GenBank) DNA topoisomerase IB
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pasg
Pseudomonas asgharzadehiana
Brite
KEGG Orthology (KO) [BR:
pasg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pasg03032
]
KSS96_15455
03400 DNA repair and recombination proteins [BR:
pasg03400
]
KSS96_15455
Enzymes [BR:
pasg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
KSS96_15455
DNA replication proteins [BR:
pasg03032
]
Prokaryotic type
DNA Topoisomerases
KSS96_15455
DNA repair and recombination proteins [BR:
pasg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
KSS96_15455
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
Motif
Other DBs
NCBI-ProteinID:
QXH65027
LinkDB
All DBs
Position
3439389..3440417
Genome browser
AA seq
342 aa
AA seq
DB search
MPDSALPADLPRDLHYVDDTQPGIRRKKVRGKFQYFDAKGERINDADQIKRLNALAVPPA
YTDVWICADPRGHLQATGRDARGRKQYRYHPRWREVRDSDKYSRLQAFGKALPPLRKRLQ
AQLAEPGFTREKVLATVVMLLDATLIRVGNTQYARDNKSYGLTTLRNRHVGIKGSEIKFQ
FRGKSGVEHQVSVRDRRLATVVRRCMELPGQNLFQYLDEEGERHTVSSHDVNAYLHSLTG
ADFTAKDYRTWAGTAMALAVLRELQWQPESEAKRHVVAMVKDVARQLGNTPAVCRKCYIH
PAVLEHFSLGELSKLPKPRKRKGLKAEEVALAMFLEQLAKGR
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgcccgactctgcgttgcccgccgatctaccccgcgatttgcattacgttgacgacacc
cagcccggtatccgccgcaagaaagtacgcggcaagttccagtatttcgatgccaagggt
gagcgcatcaacgacgctgaccaaatcaagcgtctcaacgccctggccgtgccccccgcc
tacaccgatgtgtggatctgcgccgacccgcgcggccatctgcaagccaccggccgcgac
gcgcgtgggcgtaagcaataccgctatcacccgcgctggcgtgaagtgcgcgacagcgat
aagtactcgcgcctgcaggcgttcggcaaggcgctgcccccattgcgcaagcggttgcaa
gcgcaactggcggaacccggctttacccgcgagaaagtcctggccacggtggtgatgctg
ctggacgccacgttgatccgcgtcggcaacacccagtacgcgcgcgacaacaagtcctac
gggttgaccaccctgcgcaaccgccatgtgggtatcaagggcagcgaaatcaagttccag
ttccgtggcaagagtggcgtggagcatcaggtcagcgtcagggatcggcgcctggccacg
gtggtccggcgctgcatggaattgccggggcagaacctgttccagtacctggatgaagag
ggagagcgtcacaccgtcagttcccacgatgtaaacgcctacctgcacagcctgaccggc
gccgacttcaccgccaaggattaccgcacctgggccggtaccgccatggcgctggcggta
ctgcgcgaactgcaatggcagcccgaatccgaagccaagcggcacgtggtggcgatggtt
aaggacgtcgccaggcaactgggcaatacaccggcggtgtgccgcaagtgttatatccac
cccgccgtgctagagcatttcagcctgggcgagctgtcgaaactgcccaagccgcgcaag
cgcaaggggctcaaggccgaggaagtcgcgctggccatgttccttgagcagctcgccaag
ggacgttag
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