Pseudomonas asgharzadehiana: KSS96_20845
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Entry
KSS96_20845 CDS
T07697
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
pasg
Pseudomonas asgharzadehiana
Brite
KEGG Orthology (KO) [BR:
pasg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pasg03009
]
KSS96_20845 (rlmD)
Enzymes [BR:
pasg01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
KSS96_20845 (rlmD)
Ribosome biogenesis [BR:
pasg03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
KSS96_20845 (rlmD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
MTS
Methyltr_RsmB-F
Cons_hypoth95
RrnaAD
Methyltransf_11
Methyltransf_23
Methyltransf_15
TRM5-TYW2_MTfase
PCMT
Methyltransf_37
PrmA
DREV
TPMT
Methyltransf_12
Methyltransf_4
PDGF
Motif
Other DBs
NCBI-ProteinID:
QXH66040
UniProt:
A0ABX8NWW1
LinkDB
All DBs
Position
complement(4619392..4620744)
Genome browser
AA seq
450 aa
AA seq
DB search
MAKHERGLRFQPTGGSRAPQVPVGKKQRLTIERLANDGRGIVFFEGRTWFVNGALAGEDV
EARVLGAHGKVVEARTERVFKPSELRRPAPCAHVGRCGGCSVQHLPHHEQLALKQRMLAE
QLSRVAGVEPQEWAPPLSGPEFGYRRRARVAVRWDAKAKKLEVGFRAVASQDIVAIDDCP
VLVQALQPIMQRLPNMLRRLSKPQALGHVELFSGSSIAVLLRHMAPLSEADLHVLKEFCS
FHEAQLWLHGEGRPEPVEPDQALGFRLDAWDLDLAYRPGDFVQVNAGVNEAMVAQALEWL
APQPDERVLDLFCGLGNFALPLAKQAREVVAVEGVQTMVDRAAHNALSNNLHNAQFFQAD
LSQPLTDAEWAKQGFSAVLLDPPRDGAHEVVRKLATLGAKRLVYVSCNPATLARDTVELV
KQGYRLKRAGILDMFPQTAHVEAMALFEAG
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcacgagagaggcctgcgcttccaaccgacgggcggcagccgcgccccgcag
gttccagtgggcaagaagcaacgcctgaccatcgagcggctggccaacgacggccgtggc
atcgtgttctttgaaggccgcacctggttcgtcaatggcgcgctggccggcgaagatgtc
gaagcgcgcgtgttgggggcccatggcaaagtggtcgaggcccgcacggagcgggtgttc
aagcccagcgaactgcgtcgtccggcgccgtgcgcgcatgttggccgctgtggcggttgc
agcgtgcagcacttgccccaccacgaacaactcgccctgaaacagcgcatgctcgccgaa
caactgtcccgagtggccggtgtcgagccgcaagagtgggcgccacctttgagtggtccg
gagtttggctaccgacgccgcgcccgcgtggctgtgcgctgggatgccaaggcgaaaaaa
ctcgaggtgggttttcgcgccgtggccagccaggatatcgtcgccatcgatgattgcccg
gtgctggtacaggccttgcaaccgatcatgcagcgtttgccgaacatgctgcgccgcctg
agcaaacctcaggcgctggggcatgtggagctgttcagcggttcgtccatcgccgtgttg
ctgcggcatatggcgccgctgtccgaagcggacctgcacgtcttgaaagaattttgcagc
tttcatgaggctcaattatggctgcatggcgaaggccggccggaacccgtcgagcccgat
caggccctcggttttcgcttggacgcatgggatctggatctggcttaccggccaggagat
ttcgtgcaggtcaatgccggggtcaacgaggcgatggttgcccaggctctggaatggctg
gcaccgcagcctgatgagcgggttctggacctgttctgcggcctgggcaactttgccttg
ccgctggccaagcaggcgcgggaagtggtggcggtggagggtgtgcagaccatggtggac
cgggcggcacacaatgccctcagcaacaatttgcataatgcgcagttttttcaggccgat
ttgtcccagcctttgactgacgcggaatgggccaaacagggcttttctgcggtactcttg
gacccaccccgcgatggtgcccatgaggttgtgcgcaagctcgccactctgggggccaag
cgcctggtgtatgtgtcctgcaaccccgccacgctggcgcgggacacagttgagttggtc
aagcaaggctaccggctaaaacgtgccgggatcctcgacatgtttccgcagacagcgcat
gtcgaggccatggcgttatttgaagcgggctag
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