Pseudomonas asgharzadehiana: KSS96_21820
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Entry
KSS96_21820 CDS
T07697
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
pasg
Pseudomonas asgharzadehiana
Pathway
pasg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pasg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KSS96_21820 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pasg03019
]
KSS96_21820 (rne)
03009 Ribosome biogenesis [BR:
pasg03009
]
KSS96_21820 (rne)
Enzymes [BR:
pasg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
KSS96_21820 (rne)
Messenger RNA biogenesis [BR:
pasg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KSS96_21820 (rne)
Ribosome biogenesis [BR:
pasg03009
]
Prokaryotic type
rRNA processing factors
KSS96_21820 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
QXH66230
LinkDB
All DBs
Position
4829052..4832261
Genome browser
AA seq
1069 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE
RHGFLPLKEISREYFKKAPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLIAPADMGLIVRTAGLGRSSEEMQWDLD
YLLQLWTAIKEASLDRSAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQDEALTFIR
QVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVELPSGGSIVIDPTEALVSIDINS
ARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREC
LEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCNGTGIIRDVESLSLAILRL
IEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQ
RLRDDSPEAHSGQSSYEIAAAAAEVEEVQPAAATRTLVRQEAAVKTAPARANAPVPVEVA
APVAAPAALPEPSLFKGLVKSLVSLFASKEEPVAPVVVEKPASERPARNEERRNGRQQSR
NRNGRRDEERKPREERAPREDRAPREERAPREAREDTPAVAREERAPREERAPRTPRAPR
EDRKPRGEREERVRELREPLDAAAPAVAGAAATTEERPARQPREERAPREERQPRPAREE
RQPRAEQAAAASEEEVLTGEEHSQEDGQEGAEGDRPRRRSRGQRRRSNRRERQRDANGNV
IEGSEEAGENAQAHTSEPTGAELAAGLAVTAAVASSVISAPAEAQAHEQAERATAAVEET
AAVEAPVAETPVVEAPVVEATTPIEAPVVPEVEVAPVRDAQPDTEVVAVEPAPVVEPQPV
VEAPVEVAAQAPVAEEAAPAVREVREVREEQTAFQWAAEPAAPIEAQAPAPVVEEAPAPV
AEVVEAAPVVVAEPAPAVEVPAVAEVEAPVVETPPASALTENGRAPNDPREVRRRRKEAE
AAAAAAAPAVVEAVEAPAPVAETVVEHAAAEAVVEHQAQEEEHETKPLV
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atgctgattaacgcaactcaacccgaagagttgcgtgttgcactggtagatggccaacgc
ctctacgacctggacatcgagtccggtgcacgcgagcaaaagaaggccaacatctacaaa
ggccgtattactcgcatcgaaccaagccttgaggcagcctttgtcgatttcggctccgag
cgccacggcttcctgcccctcaaagaaatctcccgcgagtacttcaagaaagcccctgaa
ggtcgcgtgaatatcaaggacgtcctgagcgaaggccaggaagtcatcgttcaggtcgaa
aaagaagaacgtggcaacaagggtgcagccctgaccactttcatcagcctggccggccgt
tacctggtgctgatgccgaacaacccacgtgccggcggtatctcccgtcgcatcgaaggc
gaagagcgcaacgaactgcgtgaagcgctgaacggcctgatcgcaccggccgacatgggc
ctgatcgtgcgcactgcgggcctgggccgcagcagcgaagaaatgcagtgggacctcgac
tacctgctgcaactgtggaccgccattaaagaagcctcgctggatcgttccgcgccgttc
ctgatctaccaggaaagcaacgtgatcatccgcgctatccgcgattacctgcgccaggac
atcggcgaagtgctgatcgacagcgttgaagcccaggacgaagccctgaccttcattcgc
caggtgatgccgcagtacgccagcaagatcaagctgtacgaagacagcgtgccgctgttc
aaccgtttccagatcgaaagccagatcgaaaccgccttccagcgcgtggttgaactgcct
tccggcggctccatcgtgatcgacccgaccgaagccctggtgtccatcgacatcaactcc
gcgcgcgccacgaagggtagcgacatcgaagaaaccgccctgcagaccaacctggaagcg
gctgaagaaatcgcccgccagctgcgtctgcgtgacatcggcggcctgatcgtgatcgac
ttcatcgacatgacccccgccaagaaccagcgcgccgtggaagagaaagtccgcgaatgc
ctggaagctgaccgtgcccgcgtacaggtcggccgcatctcgcgcttcggcctgctggag
atgtcccgtcagcgcctgcgcccttccctgggcgagagcagcggcatcgtctgcccgcgc
tgcaacggcaccggcatcatccgtgacgttgaatcgctgtccctggcgatcctgcgcctg
atcgaagaagaagccctgaaagaccgcaccgccgaagtccgcgcgcaagtgccgatcccg
gttgcagccttcctgctcaacgaaaaacgcaactcgatcaccaagatcgaactgcgcacc
cgcgcccgtatcgtgatcctgccgaacgatcacctcgaaacgccgcacttcgaagtgcag
cgcctgcgtgatgacagcccggaagcccacagcggccagtccagctatgaaatcgccgcg
gcagctgccgaagtggaagaagtccagccagctgccgcgacccgcaccctggttcgccag
gaagcagccgtgaagaccgcgccggcccgcgccaacgcaccggtgccggttgaagtcgca
gccccggttgccgcgccggccgccctgcctgagccaagcctgttcaaagggctggtgaag
tcgctggtcagcctgttcgccagcaaggaagagcctgtggcaccggtagtggttgaaaaa
ccagcatccgaacgcccggcacgcaacgaagagcgtcgcaacggtcgccagcaaagccgt
aaccgcaacggtcgccgtgacgaagagcgcaagcctcgcgaagaacgtgcaccgcgtgaa
gatcgcgcgccacgtgaagagcgtgcgcctcgcgaagcccgtgaagacaccccggccgtc
gcccgtgaagaacgtgcaccccgcgaagagcgcgcaccccgcaccccgcgcgccccacgt
gaagaccgcaagccacgtggcgagcgtgaagagcgcgtgcgtgaactgcgcgagccgctg
gacgccgccgcgccagccgttgctggcgctgccgccactaccgaagagcgcccggcccgc
cagccgcgtgaagaacgcgccccacgtgaagagcgccagccgcgccctgcgcgtgaagag
cgtcaaccacgcgccgagcaagccgctgccgccagcgaagaagaagtgctgaccggtgaa
gagcactcgcaggaagatggccaggaaggcgccgaaggcgaccgtccacgccgccgctcc
cgtggccagcgtcgtcgcagcaaccgtcgcgagcgtcagcgtgatgccaacggcaacgtg
atcgaaggctcggaagaagccggcgagaacgcgcaggcccacaccagcgaaccgaccggc
gccgaactggctgccgggctggccgttaccgctgccgttgccagctcggtcatcagcgca
cctgctgaagcccaggctcacgagcaagctgaacgcgccacggctgctgtcgaagaaacc
gctgctgtagaagcgcctgttgccgagactcccgtagttgaagcacctgtcgttgaagcc
accaccccgatcgaagccccagtggttccggaagtggaagtggcaccggttcgcgacgcc
cagccagacaccgaagtggttgccgttgaaccggctccagtggttgaacctcagccagtg
gttgaagccccggttgaagtcgcggctcaagccccggttgccgaagaagccgccccggca
gtgcgtgaagttcgtgaagttcgtgaagaacagaccgccttccaatgggctgccgagccc
gccgctccgattgaagcccaagcgcctgcgcctgtcgtagaagaagcgccggcaccggtt
gccgaagtggttgaagcggctccggttgtggttgccgagcctgcgccagcggtcgaagtg
ccggccgtcgccgaagttgaagcgccagtggtcgaaacgccccctgccagcgccctgacc
gaaaacggccgcgcaccgaacgaccctcgtgaagtgcgtcgccgtcgcaaggaagctgaa
gccgccgctgctgctgctgctccagccgtagtcgaagccgtcgaggcgccagccccggtt
gctgaaaccgtggttgagcacgccgctgctgaagcagtggtagagcaccaggcccaggaa
gaagaacacgagaccaaacctctcgtctga
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