Pseudomonas asgharzadehiana: KSS96_24130
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Entry
KSS96_24130 CDS
T07697
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
pasg
Pseudomonas asgharzadehiana
Pathway
pasg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pasg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
KSS96_24130 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pasg03400
]
KSS96_24130 (recB)
Enzymes [BR:
pasg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
KSS96_24130 (recB)
DNA repair and recombination proteins [BR:
pasg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
KSS96_24130 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_11
AAA_12
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QXH66652
LinkDB
All DBs
Position
complement(5312565..5316239)
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AA seq
1224 aa
AA seq
DB search
MNNKPLALAFPLKGSQLIEASAGTGKTFTISALYLRLVLGHGGQESGFGRELLPPQILVV
TFTDAATKELRERIRIRLAEAARFFRDEIDQPDALIAELREEYPPEQWPGCANRLDIAAQ
WMDEAAVSTIHSWCQRMLREHAFDSGSLFTQTLETDHSDLLGQVLRDYWRLFCYPMHDDA
LNWVRSNWGGPAALMPRVRALFGSERPTDENREPAELISACLQERREALINIKAPWQQWA
AELRDICLQAVAAKAVDGRKMQARYFEPWFEKISAWAADDILEQLDIGTGFTRLTPDGIA
EAWKGDPPQHPGIDAMASLKASLDALPTPDAAVLQHAAGWVSKCFEEEKRRRAEMGFDDM
LIRLNAALQADGGERLANVIREQFPVALIDEFQDTDPVQYNIFDSIYRIEENHPDSGLFL
IGDPKQAIYAFRGADIYTYLRARQSTTGRHHTLGTNFRSSHAMVEAVNHVFQRAETGRGA
FLFREPNGDNPVPFQPVLSQGRKEKLQVDGQTLPAMNLWHLPTDQPVSNAVYRQQLAGAC
ATQIVALLNGGQQGTAGFLHSDDSFKGVLPSDIAILVRDGKEAQAVRAELAARGVRSVYL
SDKDSVFAAQEAHDLLAWLKACAEPDVERPLRAALACVTLNLSLPELERLNQDELAWETR
VMQFRGYRAIWRTQGVLPMLRRLLHDFKLPQTLIARSDGERVLTNLLHLSELLQQAASEL
DGEQALIRHLAEHLASSGQAGEEQILRLESDEQLVKVVTIHKSKGLEYDLVFLPFICSAK
PVDGSRLPLHYHDEHGKSQVSLRPTAELIAQADDERLAEDLRLFYVALTRAKHACWLGVA
DLKRGNSASSVLHLSALGYLLGGGASLAESAGLARWLLDLQQGCPAIHYAHVPEAQESLF
HPPRNQATLLAPLLPKRKAAENWWIASYSALRIGDSMSVANLEAPESPQAQKLFDDERLD
PDAPREVAVSGGDIHRFPRGPNPGTFLHGLLEWAGEEGFNVSPQAIENAVGARCNRRNWE
GWIITLSGWLGHLLQTPLPVDNAHVTLSSLQQYQIEMEFWFASHKVDVLALDKLVCQYTH
NGVARVAAEPVLLNGMFKGFIDLTFEHDGRYYVADYKSNWLGPDDSAYTLDAMERSILEH
RYDLQYVLYLLALHRQLKARLPDYDYDRHVGGALYVFLRGTQSASRGAYFTRPPRELIEG
LDLLFQGKPIPPKVEPAWEQGVLL
NT seq
3675 nt
NT seq
+upstream
nt +downstream
nt
atgaacaacaaacccttggccctggccttcccgctaaaaggcagccaactgattgaagcc
agcgccggtaccggcaaaaccttcaccatctccgcgttgtacctgcgcctggtgcttggc
cacggcggtcaagagtccggctttggccgcgaactgctgccgccgcaaatcctggtggtg
accttcacggatgcggcaacgaaagagttgcgtgaacgtatccgcattcgcctggctgaa
gccgcgcggttttttcgcgacgaaatcgatcagcccgatgccctgatcgcagagctgcgc
gaagaatacccacccgagcaatggcccggctgcgccaaccgcttggacattgccgcgcag
tggatggacgaggccgccgtttcgaccattcatagttggtgccagcgcatgctgcgcgaa
catgcgttcgacagcggcagcctgtttacccagaccctggagaccgaccacagcgacctg
ctgggccaagtgctgcgcgattactggcggttgttctgctaccccatgcacgacgacgcc
ctcaactgggtgcgcagtaactggggtggccccgctgcgttgatgccacgcgtgcgcgca
ctgttcggcagcgaacggccgacagatgaaaaccgcgaacccgccgagttgatcagcgct
tgcctacaagaacgccgcgaagcgttgatcaacatcaaagctccctggcaacaatgggcc
gctgagctacgcgatatctgcctgcaagcggtggccgccaaagcggtcgacggccgcaag
atgcaagctcgctactttgagccctggttcgagaagatcagcgcctgggccgcagacgac
atcctggaacaactggacatcggcaccggttttacccggctcacccccgacggtatagcc
gaagcctggaagggcgacccaccgcagcatcccggcattgacgccatggccagccttaaa
gccagccttgacgccctgcctacccccgatgccgccgtgttgcaacacgccgccggctgg
gtgagcaagtgcttcgaagaagaaaaacgccgccgcgccgaaatgggcttcgacgacatg
ctgatccgcctcaacgcggccttgcaagccgacggcggcgagcgcctggctaacgtgatt
cgtgagcagttcccggtagccctgatcgatgaattccaagacaccgaccccgtgcaatac
aacatcttcgacagcatttaccgcatcgaagaaaaccaccccgacagcggcttgttcctg
atcggcgaccccaagcaggcgatctacgccttccgtggtgccgatatctatacctacttg
cgtgcgcggcagtccaccaccggacggcaccacaccttgggcaccaacttccgctccagc
catgcgatggtcgaggcggtaaaccatgtattccagcgcgcggaaacaggtcgcggtgcg
ttcttgttccgtgaacccaatggtgataacccggtgccgttccagccggtgctgtcccaa
ggacgcaaggaaaaactccaggtcgatggccaaacgctgccggcgatgaacctctggcac
ctgcctaccgaccaacccgtatccaacgcggtgtaccgccagcaattggccggcgcctgc
gccacgcagattgtcgcgttgctcaacggcggccagcagggcacggccggcttcctacac
tcagatgacagcttcaaaggcgtactaccgtcagacatcgccatcctcgtgcgcgacggt
aaagaagcccaggccgtgcgcgccgagttggctgctcgtggtgtgcgtagcgtgtacctg
tccgataaggactcggtgttcgccgcccaagaagcccacgacctgctggcctggctcaag
gcctgcgcagagcccgacgtcgagcgcccgctgcgcgccgcgctggcctgcgtcacgctc
aacctttccctgccggaactggagcgtctgaaccaggacgaactggcgtgggaaacccgt
gtgatgcaatttcgtggctatcgcgcgatctggcgtacccaaggcgtgctgccgatgctg
cgtcgcctgctccacgatttcaaactgccacaaaccctgatcgcccgcagcgacggcgag
cgcgtgttgaccaacctgctgcacctgagtgaactgctgcaacaggccgcttcggagctg
gatggcgaacaggcgctgatccgccatctggccgaacacctggcgtcgtccggccaggcc
ggcgaagagcagatcctgcggctggaaagcgatgagcagctggtcaaggtagtgaccatc
cacaaatccaagggcctggagtacgacttggtgttcctgccgttcatttgttcggccaaa
ccggtagacggcagccgattgccgctgcactaccacgacgaacacggtaaatcccaggtc
agcctgcgcccaaccgccgagttgattgcccaggccgatgacgagcgtctggccgaagac
ctgcgtctgttctacgtagccctgacgcgcgccaaacatgcctgctggcttggcgttgcc
gacctcaagcgcggcaacagcgccagttcggtattgcacctgtcggcgctgggctatttg
ctcggcggcggggcctcgttggcggaatcggcaggcctggcgcgttggctgctggacctg
cagcaaggctgcccggccatccactacgcccacgtacccgaagcgcaagaaagcctgttt
cacccaccgcgcaaccaggccaccttgctcgcgccgttattgcccaagcgcaaggccgcc
gaaaactggtggatcgcgtcctacagcgccttgcgcattggcgacagcatgagcgtcgcc
aatctcgaggcaccagaaagcccgcaagcgcaaaagctgttcgatgacgaacgcctcgac
cccgacgcaccgcgtgaagtggcggtgtccggcggcgacatacaccgtttcccacgcggc
cccaaccccggcaccttcctccacggcttgctggagtgggccggcgaagaaggcttcaac
gtgtcaccgcaggccatcgaaaacgccgtaggcgcccgttgcaatcgccgcaactgggaa
ggctggatcatcaccctcagcggttggctgggccatttgctgcaaacgccgctgccggtg
gataacgctcacgttaccctcagcagcctgcagcaataccagatcgaaatggagttctgg
tttgccagccataaagtcgacgtgctcgccctcgataagctggtgtgccagtacacccac
aacggtgtcgcgcgggtagccgccgagccggtgctgctcaacggtatgttcaagggcttt
atcgacctgactttcgaacatgacggccgctattacgtggccgactacaaatccaactgg
ctcggcccagacgattcggcctacaccctcgatgccatggaacgttcgatccttgagcat
cggtatgacttgcaatacgtgctttacctgctggccctgcaccgccaactgaaggctcgt
ctgccggactatgactacgaccgtcacgtcggtggtgcgctgtatgtgtttctgcgcggc
acccagtccgcgagccggggcgcgtatttcacccggccgccacgagaactgatcgaaggc
ctggacctgttgttccagggcaagcccatcccgcccaaggttgagcccgcctgggaacaa
ggagtgttgttatga
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