Pseudomonas asgharzadehiana: KSS96_25820
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Entry
KSS96_25820 CDS
T07697
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
pasg
Pseudomonas asgharzadehiana
Pathway
pasg03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pasg00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KSS96_25820 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pasg03021
]
KSS96_25820 (rpoB)
03400 DNA repair and recombination proteins [BR:
pasg03400
]
KSS96_25820 (rpoB)
Enzymes [BR:
pasg01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KSS96_25820 (rpoB)
Transcription machinery [BR:
pasg03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KSS96_25820 (rpoB)
DNA repair and recombination proteins [BR:
pasg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KSS96_25820 (rpoB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
RNA_pol_Rpb2_45
7TMR-HDED
IniB
Motif
Other DBs
NCBI-ProteinID:
QXH66968
UniProt:
A0ABX8NZC2
LinkDB
All DBs
Position
complement(5676280..5680353)
Genome browser
AA seq
1357 aa
AA seq
DB search
MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV
FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNKAIKD
IKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSARI
IPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFSLKDET
LSLELIASRLRGEIAVLDIQDEKGKVIVEAGRRITARHINQIEKAGIKSLDVPLDYVLGR
TTAKVIVHPATGEILAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFISDTLKIDS
TSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEIE
GSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERAV
KERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVSALGP
GGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVVK
DALVTDEIVFLSAIEEADHVIAQASATMNDKKVLIDELVAVRHLNEFTVKAPEDVTLMDV
SPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGVC
VVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKGD
RVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQE
LTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQL
TPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKTQLDE
IRKDLNEEFRIVEGATFERLRSALVGHKAEGGAGLKKGQDITDEILDGLEHGQWFKLRMA
EDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQPG
DKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAAKG
LGEKINRMIEEQRKVADLRKFLHEIYNEIGGRNEELDTFSDQEILDLAKNLRGGVPMATP
VFDGAKESEIKAMLKLADLPESGQMQLFDGRTGNKFERPVTVGYMYMLKLNHLVDDKMHA
RSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTVKSDDVNGRTKMY
KNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLETE
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcttactcatatactgagaaaaaacgtatccgcaaggactttagcaagttgccggac
gtcatggatgtcccgtaccttctggctatccagctggattcgtatcgtgaattcttgcag
gcgggagcgaccaaagatcagttccgcgacgtgggcctgcatgcggccttcaaatccgtt
ttcccgatcatcagctactccggcaatgctgcgctggagtacgtcggttatcgcctgggc
gaaccggcatttgatgtcaaagaatgcgtattgcgcggtgttacgtacgccgtacctttg
cgggtaaaagtccgtttgatcattttcgacaaagaatcgtcgaacaaagcgatcaaggac
atcaaagagcaagaagtctacatgggcgaaatcccattgatgactgagaacggtaccttc
gttatcaatggtaccgaacgtgtgatcgtttcccagctgcaccgttcgccgggcgtgttc
ttcgaccacgaccgcggcaagacgcacagctccggtaagctcctgtactccgcgcggatc
attccgtaccgcggttcgtggttggacttcgagttcgatccgaaagactgcgtgttcgtg
cgtatcgaccgtcgtcgcaagctgccggcctcggtactgctgcgcgcgctcggctatacc
actgagcaagtgctggatgctttctacaccaccaacgtattcagcctgaaggatgaaacc
ctcagcctggaactgattgcatcgcgtctgcgtggtgaaattgccgttctggacatccag
gatgaaaaaggcaaggtcattgttgaggcgggccgccgtattactgcgcgccacatcaac
cagatcgaaaaagccggtatcaagtcgctggacgtgcctctggactacgtcctgggtcgc
acgaccgccaaggtcatcgttcatccggctacaggcgaaatcctggctgagtgcaacacc
gagctgaacaccgagatcctggcgaagatcgccaaggcccaggttgttcgcatcgagacc
ctgtacaccaacgatatcgactgcggtccgttcatctccgacacactgaagatcgactcc
accagcaaccaattggaagcgctggtcgagatctatcgcatgatgcgtcctggtgagccg
ccaaccaaagacgctgccgagaccctgttcaataacctgttcttcagccctgagcgctac
gacctgtctgcggtcggccggatgaagttcaaccgtcgtatcggtcgcaccgagatcgaa
ggttcgggcgtgttgtgcaaggaagacatcgttgcggtcctgaagaccctggtcgacatc
cgtaacggtaaaggcatcgtcgatgacatcgaccacttgggtaaccgtcgtgttcgctgc
gtaggcgagatggctgaaaaccagttccgcgttggcctggtacgtgttgagcgtgcggtc
aaagagcgtctgtcgatggctgaaagcgaaggcctgatgccgcaagacctgatcaacgcc
aagccagtggctgcggcggtgaaagagttcttcggttccagccagctttcccagttcatg
gaccagaacaacccgctctccgagatcacccacaagcgccgcgtatccgcactgggcccg
ggcggtctgacgcgtgagcgtgcaggctttgaagttcgtgacgtacacccgacgcactac
ggtcgtgtttgcccgatcgaaacgccggaaggtccgaacattggtctgatcaactccttg
gccgcttatgcgcgcaccaaccagtacggcttccttgagagcccgtaccgcgtggtgaaa
gacgctctggtcaccgacgagatcgttttcctgtccgccatcgaagaagctgatcacgtg
atcgctcaggcttcggccacgatgaacgacaagaaagtcctgatcgacgagctggtagct
gttcgtcacttgaacgagttcaccgtcaaggcgccggaagacgtcaccttgatggacgta
tcgcccaagcaggtagtttctgttgcggcgtcgctgatcccgttcctggagcacgatgac
gccaaccgtgcgttgatgggttccaacatgcagcgtcaagctgtaccgaccctgcgcgct
gacaagccgctggtaggtaccggcatggagcgtaacgtagcccgtgactccggcgtttgc
gtcgtggctcgtcgtggcggcgtgatcgactccgttgatgcaagccgtatcgtggttcgt
gttgcggatgatgaagttgaaactggcgaagccggtgtcgacatctacaacctcaccaaa
tacacccgctcgaaccagaacacctgcatcaaccagcgtccgctggtgagcaagggtgat
cgcgtccagcgtagcgacatcatggccgacggcccgtccaccgatatgggtgagctggca
ctgggtcagaacatgcgcatcgcgttcatggcatggaacggcttcaacttcgaagactcc
atctgcctgtccgagcgtgtcgttcaagaagaccgcttcaccacgatccacattcaggaa
ctgacctgtgtggcacgtgacaccaagcttgggcctgaggaaatcactgcagacatcccg
aacgtgggtgaagctgcactgaacaagctggatgaagccggtatcgtttatgtaggtgct
gaagttggcgctggcgacatcctggtcggtaaggtcactccgaaaggcgagacccaactg
actccggaagagaagctgctgcgtgccatcttcggtgaaaaagccagcgacgttaaagac
acttccctgcgtgtacctaccggtaccaagggtactgtcatcgacgtacaggtcttcact
cgtgacggcgttgagcgtgatgctcgcgcactgtccatcgagaagactcagctcgacgag
atccgtaaggacctgaacgaagagttccgtatcgttgaaggcgcgaccttcgaacgtctg
cgctccgctctggtaggccacaaggccgaaggcggcgcaggtctgaagaaaggtcaagac
atcaccgacgaaatcctcgacggtcttgaacacggccagtggttcaaactgcgcatggct
gaagatgctcttaacgagcagctcgagaaggcccaggcttacatcgttgatcgtcgccgt
ctgctggacgacaagttcgaagacaagaagcgcaaactgcagcagggcgatgacctggct
ccaggcgtgctgaaaatcgtcaaggtttacctggcaatccgtcgccgcattcagccgggc
gacaagatggccggtcgtcacggtaacaaaggtgtggtctccgtgatcatgccggttgaa
gacatgccgcacgatgccaatggcaccccggtcgatgtggtcctcaacccgttgggcgta
ccttcgcgtatgaacgttggtcagatccttgaaacccacctgggcctcgcggccaaaggt
ctgggcgaaaagatcaaccgcatgatcgaagagcagcgcaaggtcgcagacctgcgcaag
ttcctgcacgagatctacaacgagatcggcggtcgcaacgaagagctggacaccttctcc
gatcaggaaatcctggatctggcgaagaacctgcgcggcggcgttccaatggctaccccg
gtattcgacggtgccaaggaaagcgaaatcaaggccatgctgaagctggcagacctgccg
gaaagcggccagatgcagctgttcgacggccgcaccggcaacaagttcgagcgcccggtt
actgttggctacatgtacatgctgaagctgaaccacttggtagacgacaagatgcacgct
cgttctaccggttcgtacagcctggttacccagcagccgctgggtggtaaggctcagttc
ggtggtcagcgtttcggggagatggaggtctgggcactggaagcatacggtgctgcatac
actctgcaagaaatgctcacagtgaagtcggacgatgtgaacggtcgtaccaagatgtac
aaaaacatcgtggacggcgatcaccgtatggagccgggcatgcccgagtccttcaacgtg
ttgatcaaagaaattcgttccctcggcatcgatatcgatctggaaaccgaataa
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integrated database retrieval system
