Pseudomonas asgharzadehiana: KSS96_26740
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Entry
KSS96_26740 CDS
T07697
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
pasg
Pseudomonas asgharzadehiana
Pathway
pasg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pasg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KSS96_26740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pasg03019
]
KSS96_26740
Enzymes [BR:
pasg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KSS96_26740
Messenger RNA biogenesis [BR:
pasg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KSS96_26740
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
QXH67141
UniProt:
A0ABX8P104
LinkDB
All DBs
Position
5877557..5879443
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AA seq
628 aa
AA seq
DB search
MSFASLGLSEALVRAIEAAGYTEPTPVQQRAIPAVLQGRDLMVAAQTGTGKTGGFALPIL
ERLFPNGHPDKSQRHGPRQPRVLVLTPTRELAAQVHDSFKLYARDLKFVSACIFGGVGMN
PQVQAMSRGVDVLVACPGRLLDLCGQGSVDLSHVEILVLDEADRMLDMGFVHDVKKVLAR
LPAKRQNLLFSATFSQDITALAGKLLHNPERIEVTPPNTTVERIEQRVFRLAASHKRSLL
AHLITHGAWEQVLVFTRTKHGANRLAEYLDKHGLTAVAIHGNKSQNARTKALADFKAGSV
RILVATDIAARGLDIDQLPHVVNFELPNVDEDYVHRIGRTGRAGRSGEAISLVAPDEEKL
LKSIERMTKQKIADGDLMGFDASAVEAEKPEVRERPDVRNPRNPRGPKGDGPNGGGGGGG
RRDKGKDKGGKDKAPTNGRGERPAREQKPREGTPAREQRQPSQPPRAAADRAPDEFLDDD
VDNFGNRVDYVPQAKPAQGRGRRPGAPAQGAGAAAPRSGQPQGARQNGPRNSSGGTTGTP
PAKRSGPRNGAPRDGQARREDSRSNNRRPARDDQPRSSEPAVQNPRGGPAPKIIHKESKA
DRFPTPEQLDQLPGRPRGEKPALLTRNR
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgtcctttgcttccctcggtctctccgaggctttagtccgcgccatcgaggcagcgggc
tataccgagcctactccggtgcaacagcgggccattcccgccgtgttgcaaggtcgcgac
ctcatggttgcggctcagacaggtactggtaaaaccggcggtttcgccctcccgatcctg
gagcggttgttccccaacggtcacccggacaaatcccagcgtcacggcccgcgccaaccg
cgcgtactggtcctgaccccaacccgcgaactggccgcccaggtgcatgacagcttcaag
ctgtacgcccgcgacttgaagttcgtcagcgcctgcatattcggcggcgtcggcatgaac
ccgcaggttcaggccatgtcccgtggtgttgacgtgctggtagcgtgccccggtcgtttg
ctcgacctgtgcggccaaggcagcgtcgatttgtcccacgtggaaatcctcgtgctggac
gaagccgaccgcatgctcgacatgggctttgtccatgacgtgaaaaaggtcctcgcccgc
ctgccggccaaacgtcagaacctgctgttctcggcaacgttctcccaggacatcaccgcc
ctggccggcaagctgctgcacaacccggaacgcatcgaagtcacgccgccgaacaccacg
gtcgagcgtatcgaacaacgcgtcttccgcctggccgccagccacaagcgctcgttgctg
gcccacctgattacccatggcgcgtgggagcaggtattggtgttcacccgcaccaagcac
ggcgccaaccgcctggccgaatacctggacaaacacggcctcaccgccgtcgccatccac
ggcaacaagagccagaacgcacgcaccaaagccctcgccgacttcaaggccggttccgtg
cgtatcctggtggccaccgacatcgccgcccgcggcctggatatcgaccagctgccgcac
gtggtcaacttcgagctgccgaacgtcgatgaagactatgtgcaccgtatcggccgtacc
ggccgtgccggtcgttcgggtgaagccatctccctggtagccccggacgaagaaaaactg
ctcaaaagcatcgagcgcatgaccaagcagaaaatcgccgacggcgacctgatgggcttc
gatgccagcgcggtagaggccgagaagcctgaagtacgcgagcgtcccgatgtgcgtaac
ccacgcaacccacgcggtccgaagggcgatggcccgaacggcggcggtggtggcggtggt
cgtcgcgacaagggcaaagacaagggcggcaaagacaaagcgccaaccaacggccgtggc
gaacgcccagcccgtgagcagaaaccacgcgaaggcaccccggcacgcgaacagcgccag
ccgagccagccgccacgcgcagccgccgaccgcgcgccggacgagttcctcgacgacgac
gtggataacttcggtaaccgcgttgactacgtgccccaggccaaaccggcacagggccgt
ggtcgtcgtccaggcgcaccggcacagggcgcaggcgccgcggcaccacgcagcggccag
cctcagggcgctcgtcagaacggcccacgcaacagcagcggcggcaccaccggtacgcca
cctgccaaacgcagcggcccgcgtaacggcgcaccgcgtgacggccaggctcgtcgcgaa
gattcgcgcagcaacaaccgccgtccggcccgtgacgaccagcctcgttcgtccgagcca
gcggtgcagaacccgcgcggcggcccagcccccaaaatcatccacaaggagtcgaaagcc
gaccgattcccgacacccgagcaactggatcagttgccaggccgtcctcgtggtgaaaaa
ccagcgctgctgacccgcaaccgctga
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