Pseudomonas asiatica: LG197_07075
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Entry
LG197_07075 CDS
T08841
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
pasi
Pseudomonas asiatica
Pathway
pasi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pasi00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LG197_07075 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pasi03021
]
LG197_07075 (rpoD)
Transcription machinery [BR:
pasi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LG197_07075 (rpoD)
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
WDM89834
LinkDB
All DBs
Position
complement(1578741..1580591)
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AA seq
616 aa
AA seq
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MSGKAQQQSRIKELITRGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFES
APDADALLLAEADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMGAIAHFPGTVDYILSEYDRVTSEGGRLSDVLSGYIDPDDNIAAPTEE
VPIPGTKAAAAKEESDDDEDESESGDDEEEAESGPDPEVARQRFGAVNDQLQATNKVLKK
NGRTHQESIDALQALADLFMPIKLVPKQFEVLVERVRDALNRLRQQERAIMQLCVRDARM
PRADFLRMFPSNETDQTWSGDLAKRNTKWAAALGEKDAAIVACQQKLIDLETETGLTVAE
IKEINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
PTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATV
ESLKEATRDVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPTRSEHLRSFLDE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcagtctcgtatcaaagagttgatcacccgcggtcgtgag
cagggctacctgacttacgcggaggtcaacgaccacctgcctgaggatatttcagatccg
gaacaggtggaagacatcatccgcatgatcaacgacatggggatcaacgtattcgagagt
gctccggatgcggatgcccttctgttggcggaagccgacaccgacgaagccgcggccgaa
gaagccgctgctgcgttggcggcagttgaaaccgatatcggccgcacgaccgacccggtg
cgcatgtacatgcgcgaaatgggcaccgtcgagctgctgacccgcgaaggcgagatcgaa
atcgccaagcgtatcgaggaaggcatccgtgaagtcatgggcgccatcgctcacttcccg
ggcactgtcgactacattctcagcgaatatgaccgtgtcaccagcgaaggcggccgtctg
tcggacgttctcagcggttacatcgatcctgacgacaatatcgccgcgccgaccgaagaa
gtgccgatcccgggcaccaaggccgccgctgcgaaggaagagtccgacgacgacgaggac
gaatccgaaagcggtgacgacgaggaagaggccgagagcggcccggacccggaagtcgcc
cgtcagcgtttcggcgcggtcaacgaccagcttcaggccaccaacaaggttctgaagaag
aatggtcgcacccaccaggaaagcatcgacgccctgcaggccctggccgatttgttcatg
ccgatcaagctggtaccgaagcagttcgaggtactggtagagcgtgttcgtgacgccctg
aaccgcctgcgccagcaggaacgcgccatcatgcagctgtgcgtgcgtgatgcccgcatg
ccgcgtgccgacttcctgcgcatgttcccgagcaacgaaaccgaccagacctggagcggt
gacctggccaagcgcaacaccaaatgggctgccgccctgggtgaaaaggacgctgccatc
gtcgcttgccagcagaagctgatcgaccttgagaccgaaaccggcctgaccgttgccgag
atcaaggaaatcaaccgtcgcatgtcgatcggtgaagccaaggcccgccgcgccaagaaa
gaaatggtcgaggcgaacctgcgtctggtgatctccatcgccaagaagtacaccaaccgt
ggcttgcaattcctcgacctgatccaggaaggcaacatcggcttgatgaaagcggtggac
aagttcgaataccgtcgcggctacaagttctcgacctatgccacctggtggatccgccag
gcgatcacccgttcgatcgccgaccaggcgcgcaccatccgtattccggtgcacatgatc
gagacgatcaacaagctcaaccgtatttcccgccagatgctgcaggaaatgggtcgcgaa
ccgaccccggaagagctgggcgagcgcatggaaatgcctgaggacaagatccgtaaggta
ctgaagatcgccaaagagccgatctccatggaaaccccgatcggtgacgacgaagattcg
cacctgggcgacttcatcgaggactcgaccatgcagtccccgattgacgtggccacggtc
gaaagcctcaaggaagccactcgtgacgtgctctcgggcctgaccgcacgcgaagccaag
gtgctgcgtatgcgcttcggtatcgacatgaacaccgaccacaccctcgaagaggtgggc
aagcagttcgacgtgacccgcgagcggatccgtcagatcgaagcgaaggcgttgcgcaaa
ctgcgccacccgactcgcagcgagcatctgcgctccttcctcgacgagtga
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