Pseudomonas asiatica: LG197_07410
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Entry
LG197_07410 CDS
T08841
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
pasi
Pseudomonas asiatica
Pathway
pasi03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
pasi00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LG197_07410 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pasi03021
]
LG197_07410 (rpoC)
03400 DNA repair and recombination proteins [BR:
pasi03400
]
LG197_07410 (rpoC)
Enzymes [BR:
pasi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LG197_07410 (rpoC)
Transcription machinery [BR:
pasi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LG197_07410 (rpoC)
DNA repair and recombination proteins [BR:
pasi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LG197_07410 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
WDM89891
LinkDB
All DBs
Position
1649643..1653842
Genome browser
AA seq
1399 aa
AA seq
DB search
MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL
PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM
GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG
EAALHAKIKVRINETVKERDGSVVKNTRIVDTTVGRALLFQVVPAGLPYDVVNQPMKKKA
ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIGTATDE
VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDREGKEVEQESFN
SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEIDCGTDQGLLMTPHIEGGDVVEPLGERVL
GRVIARDVFKPGTEDVIVPAGTLVDEKWVEFIELNSIDEVVVRSPINCETRYGICAKCYG
RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGMVRL
HNLKQVERADGNLVAVSRSGELAIADEFGRERERYKLPYGAVISVKEGEKVEAGAIVAKW
DPHTHPIVTELKGTVTFVGMEEGITIKRQTDELTGLTNIEVLDVKDRPAAGKEIRPAIKM
VDASGKDLYLPGTDVPAQYFLPANALVGVADGAQIGVGDVIARIPQETSKTRDITGGLPR
VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPTDGSDPYEELIPKWRHLNVFE
GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM
LRKVEITESGDSSFIKGDQMELTQVLVENERLASEDKFISKFSRVLLGITKASLSTESFI
SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERKRRRDADKPLR
VSASEVEAALTEALNSSGN
NT seq
4200 nt
NT seq
+upstream
nt +downstream
nt
ttgaaagacctactgaatttgctgaaaaaccagggtcaagtcgaagagttcgacgccatc
cgcatcggtctggcgtcgcctgaaatgatccgttcgtggtcgttcggtgaagttaagaag
ccggaaaccatcaactaccgtacgttcaaacctgagcgtgacggcctgttctgcgccaag
atctttggcccagtcaaggactacgagtgcctgtgcggcaagtacaagcgcctcaagcat
cgcggcgtgatctgcgagaagtgcggcgttgaagttgccctggcaaaagttcgtcgtgag
cgcatggcgcacatcgaactggcctcaccggttgcccacatctggttcctgaagtcgctg
ccgtcccgtatcggcctgctgatggacatgaccctgcgtgacatcgagcgcgtgctctac
ttcgagagctacgtcgttatcgacccgggcatgacgaccctggaaaaaggccagctgctg
aacgacgagcagtacttcgaagcgctggaggagttcggtgatgacttcgacgcccgcatg
ggtgccgaggctgtccgcgagctgctgcacgctatcgacctggagcacgagatcggtcgc
ctgcgcgaagagattccgcagaccaactcggaaacgaagatcaagaagctgtccaagcgc
ctgaagctgatggaagcgttccagggttcgggcaacctgcctgagtggatggtcctgacc
gtcctgcctgtgctgccgccggacctgcgtccgctggtaccgctggatggcggccgcttc
gcgacctccgacctgaacgacctgtatcgtcgggtgatcaaccgtaacaaccgtctgaag
cgcctgctggatctgtcggcgccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gaagcggtcgacgccctgctggacaacggccgtcgcggtcgcgccatcactggctcgaac
aagcgtccgctgaagtccctggccgacatgatcaaaggtaagcaaggtcgcttccgtcag
aacctgctcggtaagcgtgtggactactccggccgttcggtaattaccgtaggcccgacc
ctgcgtctgcaccagtgcggtctgccgaagaagatggccctcgagctgttcaagccgttc
attttcggcaagctggaaatgcgtggtctggcgaccaccatcaaggctgccaagaagatg
gtcgagcgtgagctgccagaggtgtgggacgtactcgccgaggtgatccgcgaacacccc
gtgctgctcaaccgtgcaccgaccctgcaccgtctgggtatccaggcatttgaaccggtt
ctgatcgaaggtaaggctatccagctgcacccgctggtctgtgccgcgtacaacgccgac
ttcgacggtgaccagatggctgttcacgtgccgctgaccctggaagcccagctcgaagcg
cgcgcgttgatgatgtcgaccaacaacatcctgtcgccagccaacggtgagccaatcatc
gttccgtcgcaggacgtggtactgggtctgtactacatgacccgtgaggccatcaacgcc
aagggcgaaggtcgcgtgttcgccgacctgcaggaagtcgaccgcgtattccgcgccggc
gaagctgccctgcacgcgaaaatcaaggttcgtatcaacgaaaccgtgaaagagcgtgac
ggttccgtggtcaagaacacccgcatcgtcgacaccaccgtcggccgtgcgctgctgttc
caggttgtaccggcaggtctgccctacgacgtggtcaaccagccgatgaagaagaaggcg
atctccaagctgatcaaccagtgctaccgcgtggttggtctgaaagagaccgtaatcttt
gctgaccagctgatgtacaccggtttcgcttactcgaccatttccggcgtttcgattggt
gttaacgacttcgttatcccggacgagaaagctcgcatcatcggtaccgctaccgacgaa
gtgaaggaaatcgagagccagtacgcctccggcctggtaacccagggcgaaaagtacaac
aaggtcatcgacttgtggtcgaaggcgaacgacgaagtgtccaaggcgatgatggccaac
ctctcgaaagagaaggtcatcgatcgcgaaggcaaggaagtcgagcaagagtccttcaac
tcgatgtacatgatggctgactccggtgcgcggggttccgcagcccagatccgtcagctg
gccggtatgcgtggcctgatggccaagccggacggctccattatcgagacgccgatcact
gcgaacttccgtgaaggtctgagcgttctgcagtacttcatttcgacccacggtgctcgt
aagggtctggcggataccgcactgaagaccgccaactccggttacctgactcgtcgtctg
gtagacgttgcccaggatctggttgttaccgagatcgactgcggcaccgaccagggcctg
ctgatgaccccgcacatcgaaggtggtgacgttgtagaaccgctgggtgagcgtgtgctg
ggtcgtgtcatcgcccgtgacgtgttcaagccaggcaccgaggacgtcatcgttccggcc
ggtaccctggtcgacgagaagtgggtcgaattcatcgagctgaacagcatcgacgaagtg
gtcgtgcgttcgccgatcaactgcgaaacccgttacggcatctgcgccaagtgctacggt
cgtgacctggctcgcggtcaccaggtgaacatcggtgaagctgtcggcgttatcgctgcg
cagtcgatcggtgagccgggtacccagctgaccatgcgtacgttccacatcggtggtgct
gcaagccgtacctcggctgccgacagcgtccaggtgaagaacggcggtatggtgcgtctg
cacaacctgaagcaggtagaacgtgccgatggcaacctggttgccgtatcgcgttcgggc
gagttggccattgccgacgagttcggtcgtgagcgtgagcgctacaagctgccttatggt
gcggtaatttcggtcaaggaaggtgaaaaggtcgaagctggcgctatcgtcgccaagtgg
gacccgcacacccacccgatcgttaccgaactgaaaggtaccgtgaccttcgttggcatg
gaagaaggcatcaccatcaagcgtcagactgacgaattgacgggtttgaccaacattgaa
gtactggacgtcaaggatcgccctgccgctggcaaggaaatccgtcctgctatcaagatg
gtcgacgcttctggcaaggatctgtacctgccaggtaccgacgtacctgcccagtacttc
ctgccggccaacgccctcgtcggcgtggctgacggtgcccagatcggtgttggtgacgtt
atcgcgcgtatcccgcaagaaacgtcgaagacccgtgacatcaccggtggtctgccgcgc
gttgccgacctgttcgaagcgcgccgtccgaaagaggcctcgattctggctgaagtcagc
ggcaccatcgcgttcggcaaggagaccaagggcaagcgtcgtctggtcatcaccccgacc
gacggtagcgatccgtacgaagagctgattccgaagtggcgccacctgaacgtcttcgaa
ggcgaacaggtaaaccgcggcgaagttatctccgacggcccgagcgatccgcacgacatt
ctgcgtctgctgggtgtgagcgcgctggcgaagtacatcgtcaacgagatccaggacgtt
taccgtctgcaaggcgttaagatcaacgacaagcacatcgagaccatcctgcgtcagatg
ctgcgcaaggtcgagatcaccgagtcgggtgactccagcttcatcaagggcgaccagatg
gaactgacccaggtactggtagagaacgagcgtctcgccagcgaggacaagttcatctcc
aagttctcccgcgtgctgctgggtatcaccaaggcctcgctgtcgaccgagtcgttcatc
tccgcggcttccttccaggaaaccacccgcgtactgaccgaagcggcggtaaccggcaag
cgcgactacctgcgcggcctgaaagagaacgtggtcgtgggtcgtctgattccggccggt
actggtctggcctaccacagcgagcgtaagcgtcgccgtgatgccgacaagccgctgcgt
gtgagcgccagtgaggtggaagccgcactgaccgaagcgctgaactccagcggtaactaa
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