Pseudomonas asiatica: LG197_07830
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Entry
LG197_07830 CDS
T08841
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pasi
Pseudomonas asiatica
Brite
KEGG Orthology (KO) [BR:
pasi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pasi03016
]
LG197_07830
Enzymes [BR:
pasi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
LG197_07830
Transfer RNA biogenesis [BR:
pasi03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
LG197_07830
Prokaryotic type
tRNA splicing ligases
LG197_07830
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
PRMT5
Motif
Other DBs
NCBI-ProteinID:
WDM89970
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All DBs
Position
1722883..1724088
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AA seq
401 aa
AA seq
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MDILQVAGGKPVKLWTDGVPVEDDARKQLLNTARMPFIFKHLAVMPDVHLGKGSTIGSVI
PTVGAIIPAAVGVDIGCGMIAARTSLHARDLPDNLHGLRNAIEHAVPHGKTFGKRDQGAW
ADVPAKADKAWGQLAGRFKAITDKYPRLEKTNNRHHLGTLGGGNHFIEVCLDEADRVWFM
LHSGSRGVGNAIGNLFIELAQADMRQHLANLPDKDLAYFEEGSRHFADYVEAVEWAQDYA
RQNRELMMLAVVGAARKALGKPFEASLEAVNCHHNYVQREQHFGREVLVTRKGAVSAQKG
QLGIIPGSMGAKSFIVRGLGNEESFCSCSHGAGRAMSRTKAKSRFTVEDQRRATAHVECR
KDKEVIDEIPMAYKDIDAVMRAQQDLVEVVHTLRQVVCVKG
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atggacattctccaggtcgccggcggcaagccggtcaagttgtggaccgacggcgtaccg
gtggaagacgacgcccgcaagcaactgctcaacacggccaggatgccgttcatcttcaag
cacctggctgtgatgccggacgtgcatctgggcaaaggctcgaccatcggcagtgtgatc
cccacggttggcgcgatcattcccgccgcggtgggtgtggatatcggctgcggaatgatc
gccgcgcgcacgtcgctgcacgcccgtgacttgccggacaacctgcatggcctgcgcaat
gccatcgagcacgccgtgccgcatggcaagaccttcggcaaacgtgaccagggcgcctgg
gccgatgtgccggccaaggcggacaaggcctgggggcagttggccgggcgcttcaaggcc
atcaccgacaagtacccgcgcctggagaagaccaataaccgccatcacctggggacgctg
ggcggcggcaaccacttcatcgaggtgtgcctggacgaggccgaccgcgtctggttcatg
ctgcacagcggctcccggggcgtgggcaatgccatcggcaacctgttcatcgaactggcc
caggccgacatgcgccagcacctggccaatttgccggacaaggacctggcgtatttcgag
gaaggcagccgccatttcgccgactacgttgaagcggtggagtgggcgcaggactacgcc
aggcagaaccgcgagctgatgatgctggcggtggtcggtgcggctcgcaaggcgctcggc
aaaccgttcgaggccagcctggaagcggtgaactgccaccataactatgtgcagcgcgag
cagcattttggccgagaggtgctggtgacgcgcaagggggcggtgtcggcgcagaaaggg
cagttgggcatcattcccggctcgatgggggccaagagcttcatcgtgcgagggctgggc
aacgaggaatcgttctgttcctgcagccatggtgccggccgggcgatgagccggaccaag
gccaagagccgcttcaccgtggaagaccagcggcgggccacggcgcatgtggaatgccgc
aaggacaaggaggtgatcgacgagatccccatggcctacaaggacatcgatgcggtgatg
cgcgcgcagcaggacttggtggaggtggtgcacaccttgcggcaggtggtgtgtgtgaag
ggctga
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