Pseudomonas asiatica: LG197_10100
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Entry
LG197_10100 CDS
T08841
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
pasi
Pseudomonas asiatica
Pathway
pasi02020
Two-component system
pasi02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
pasi00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
LG197_10100
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
LG197_10100
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pasi03021
]
LG197_10100
Transcription machinery [BR:
pasi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
LG197_10100
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_IclR
HTH_21
Motif
Other DBs
NCBI-ProteinID:
WDM90381
LinkDB
All DBs
Position
complement(2208671..2210164)
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AA seq
497 aa
AA seq
DB search
MKPSLVLKMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEDGDDFDNSD
PMADNAENKPAAEVQDNSFQESTTSADTLEDGEWSERIPNELPVDTAWEDIYQTSASSLP
SNDDDEWDFTTRTSAGESLQSHLLWQLNLAPMSDTDRLIAVTLIDSINGQGYLEDTLEEI
CAGFDPELDIELDEVEAVLHRIQQFEPAGVAARTLGECLLLQLRQLPASTPWMAEAKRLV
TDFIDLLGSRDYSQLMRRMKIKEDELRQVIELVQSLNPRPGSQIESSEPEYVVPDVIVRK
DSDRWLVELNQEAIPRLRVNPQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNETL
MKVATQIVEHQRGFLDHGDEAMKPLVLHDIAEAVGMHESTISRVTTQKYMHTPRGIYELK
YFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTVAK
YRESLGIAPSSERKRLM
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccatcgctcgtcctaaaaatgggccagcaactgacgatgacaccgcagttgcaa
caggccatccgcctgctccagctctccaccctggacctccaacaggaaatccaggaagcg
ctggagtcgaacccgatgctcgaacgtcaggaagacggcgacgacttcgacaacagcgac
ccgatggcggacaacgccgagaacaagccggccgctgaagtccaggacaacagcttccag
gaaagcacgaccagtgccgacaccctggaagacggtgaatggagcgagcgcatccccaac
gaactgccggtcgacaccgcctgggaagacatctaccagaccagtgccagcagcttgccg
agcaacgacgacgacgagtgggacttcaccacccgcacatcggccggcgaaagcctgcaa
agccacctgctgtggcaactgaacctggctccgatgtccgacaccgaccgcctgatcgcc
gtcaccctgatcgacagcatcaacggccagggctacctggaagacaccctcgaggagatc
tgcgccggtttcgatccggagctggatatcgagctggacgaggtcgaagcggtactgcac
cgcatccagcagttcgagccagcaggcgttgccgcccgcacccttggcgaatgcctgttg
ctgcaattgcgccagctgcccgccagcaccccgtggatggcggaagccaagcgcctggtc
accgacttcatcgacctgctcggcagccgcgactacagccagctgatgcgtcgcatgaaa
atcaaggaagacgagctgcgccaggtcatcgagctggtacaaagcctcaacccgcgcccc
ggctcgcagatcgagtccagcgagcctgagtacgtggtgcccgacgtcatcgtacgcaag
gacagcgaccgctggctggtggagctgaaccaggaggccattccgcggctgcgcgtaaac
ccgcagtacgctggctttgtgcgccgggccgacaccagtgccgacaacaccttcatgcgc
aaccagctgcaggaagcgcgctggttcatcaagagcctgcaaagccgcaacgaaaccctg
atgaaggtggccacgcagatcgtcgagcaccagcgcggcttcctcgaccacggcgacgaa
gcgatgaagcccttggtgctgcatgacatagccgaagcggtgggcatgcacgagtcgacc
atttcgcgggtaaccacgcagaaatacatgcacaccccgcgtggcatctacgaactgaaa
tactttttctccagccacgtcagcacctccgaaggcggagaatgctcgtctacggctatc
cgcgcgatcatcaagaaactggttgcggcggaaaatcagaaaaagccattgagtgacagc
aagatcgctggtttactggaggcacaaggcatccaggtagcccgtcgcaccgtcgccaag
taccgcgagtccctcggcatcgcaccgtcgagcgagcgcaagcgactgatgtag
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