Pseudomonas asiatica: LG197_13560
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Entry
LG197_13560 CDS
T08841
Symbol
fadB
Name
(GenBank) fatty acid oxidation complex subunit alpha FadB
KO
K01825
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase / enoyl-CoA isomerase [EC:
1.1.1.35
4.2.1.17
5.1.2.3
5.3.3.8
]
Organism
pasi
Pseudomonas asiatica
Pathway
pasi00071
Fatty acid degradation
pasi00280
Valine, leucine and isoleucine degradation
pasi00310
Lysine degradation
pasi00362
Benzoate degradation
pasi00380
Tryptophan metabolism
pasi00410
beta-Alanine metabolism
pasi00640
Propanoate metabolism
pasi00650
Butanoate metabolism
pasi00907
Pinene, camphor and geraniol degradation
pasi00930
Caprolactam degradation
pasi01100
Metabolic pathways
pasi01110
Biosynthesis of secondary metabolites
pasi01120
Microbial metabolism in diverse environments
pasi01200
Carbon metabolism
pasi01212
Fatty acid metabolism
Module
pasi_M00087
beta-Oxidation
pasi_M00957
Lysine degradation, bacteria, L-lysine => glutarate => succinate/acetyl-CoA
Brite
KEGG Orthology (KO) [BR:
pasi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00640 Propanoate metabolism
LG197_13560 (fadB)
00650 Butanoate metabolism
LG197_13560 (fadB)
09103 Lipid metabolism
00071 Fatty acid degradation
LG197_13560 (fadB)
09105 Amino acid metabolism
00280 Valine, leucine and isoleucine degradation
LG197_13560 (fadB)
00310 Lysine degradation
LG197_13560 (fadB)
00380 Tryptophan metabolism
LG197_13560 (fadB)
09106 Metabolism of other amino acids
00410 beta-Alanine metabolism
LG197_13560 (fadB)
09109 Metabolism of terpenoids and polyketides
00907 Pinene, camphor and geraniol degradation
LG197_13560 (fadB)
09111 Xenobiotics biodegradation and metabolism
00362 Benzoate degradation
LG197_13560 (fadB)
00930 Caprolactam degradation
LG197_13560 (fadB)
Enzymes [BR:
pasi01000
]
1. Oxidoreductases
1.1 Acting on the CH-OH group of donors
1.1.1 With NAD+ or NADP+ as acceptor
1.1.1.35 3-hydroxyacyl-CoA dehydrogenase
LG197_13560 (fadB)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.1 Hydro-lyases
4.2.1.17 enoyl-CoA hydratase
LG197_13560 (fadB)
5. Isomerases
5.1 Racemases and epimerases
5.1.2 Acting on hydroxy acids and derivatives
5.1.2.3 3-hydroxybutyryl-CoA epimerase
LG197_13560 (fadB)
5.3 Intramolecular oxidoreductases
5.3.3 Transposing C=C bonds
5.3.3.8 Delta3-Delta2-enoyl-CoA isomerase
LG197_13560 (fadB)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
3HCDH_N
ECH_1
3HCDH
ECH_2
NAD_binding_2
SDH_protease
Motif
Other DBs
NCBI-ProteinID:
WDM91019
LinkDB
All DBs
Position
2963183..2965330
Genome browser
AA seq
715 aa
AA seq
DB search
MIYEGKAITVKALESGIVELKFDLKGESVNKFNRLTLNELRQAVDAIKADASVKGVIVSS
GKDVFIVGADITEFVDNFKLPEAELVAGNLEANRIFNAFEDLEVPTVAAINGIALGGGLE
MCLAADYRVMSTSAKIGLPEVKLGIYPGFGGTVRLPRLIGSDNAIEWIAAGKENRAEDAL
KVGAVDAVVAPQLLMAGALDLVKRAISGELDYKAKRQPKLEKLKLNAIEQMMAFETAKGF
VAGQAGPNYPAPVEAIKTIQKAANFGRDKALEVEAAGFAKLAKTSVAESLIGLFLNDQEL
KRKAKAHDEIAHDVKQAAVLGAGIMGGGIAYQSAVKGTPILMKDIREEAIQLGLNEASKL
LGNRVEKGRLTPAKMAEALNAIRPTLSYGDFANVDIVVEAVVENPKVKQAVLAEVEAQVK
DDAILASNTSTISINLLAKALKRPENFVGMHFFNPVHMMPLVEVIRGEKSSEVAVATTVA
YAKKMGKNPIVVNDCPGFLVNRVLFPYFGGFAKLVSAGVDFVRIDKVMEKFGWPMGPAYL
MDVVGIDTGHHGRDVMAEGFPDRMKDERRSAVDALYEANRLGQKNGKGFYAYETDKRGKP
KKVADATVLDVLKPIVFEQREVTDEDIINWMMIPLCLETVRCLEDGIVETAAEADMGLVY
GIGFPPFRGGALRYIDSIGVAEFVALADQYADLGPLYHPTAKLREMAKNGQRFFN
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgatttacgaaggtaaagccatcacggttaaggctcttgaaagtggcatcgtcgagctc
aagttcgacctcaagggtgagtccgtcaacaagttcaaccgcctgaccctgaacgaactg
cgccaggccgtcgatgccatcaaggccgacgcctcggtcaagggcgtgatcgtcagcagt
ggcaaggacgtgttcatcgtcggcgccgacatcaccgagttcgtcgacaacttcaagctg
cccgaggccgaactggtcgccggcaacctggaagccaatcgcattttcaacgccttcgaa
gacctcgaagtgccgaccgtcgccgccatcaacggcatcgccctgggcggcggcctggaa
atgtgcctggccgccgactaccgggtcatgtccaccagcgccaagattggcctgccggaa
gtcaaactgggtatctacccgggcttcggcggtaccgtgcgcctgccgcgcctgatcggt
tcggacaacgccatcgaatggatcgccgccggcaaggaaaaccgtgccgaggacgccctg
aaagtgggtgccgtcgacgccgtggtcgcgcctcaactgctgatggccggtgcccttgac
ctggtcaagcgcgccatcagtggcgagctggactacaaggccaagcgccagcccaagctg
gaaaagctcaagctcaatgccatcgagcagatgatggccttcgagactgccaagggcttc
gtcgccggccaggccggccctaactacccagccccggtcgaagccatcaagaccatccag
aaggctgccaacttcggtcgtgacaaggccctggaagtggaagccgcaggcttcgccaag
ctggccaagacctcggttgccgaaagcctgatcggcctgttcctcaacgaccaggaactc
aagcgcaaggccaaggcgcatgacgaaatcgcccacgacgtgaagcaggccgccgtgctc
ggcgccggcatcatgggtggcggcatcgcctaccagtcggcggtcaagggcaccccgatc
ctgatgaaggatatccgcgaggaagccatccagctgggcctgaacgaggcctccaagctg
ctcggcaatcgcgtcgagaagggccgcctgaccccggccaagatggccgaggcactcaac
gccattcgcccgaccctgtcctatggcgatttcgccaatgtcgacatcgtcgtcgaggcc
gtggtcgaaaacccgaaagtcaagcaggccgtgctggctgaagtggaagcccaggtgaag
gacgatgcgatcctcgcttccaacacctcgaccatttccatcaacctgctggccaaggcg
ctcaagcgcccggaaaacttcgtcggcatgcacttcttcaacccggtgcacatgatgccg
ctggtggaagtcatccgtggcgagaagtccagtgaagtggcggttgccaccaccgtggcc
tacgccaagaaaatgggcaagaacccgatcgtggtcaacgactgcccgggcttcctggtc
aaccgcgtgctgttcccgtacttcggcggcttcgccaagctggtaagcgccggtgtcgac
ttcgtgcgtatcgacaaggtcatggaaaagttcggctggccgatgggcccggcgtacctg
atggacgtggtcggcatcgacaccggccaccacggccgcgacgtgatggccgaaggcttc
ccggaccgcatgaaggacgagcgccgctcggccgttgacgcactttacgaggccaaccgc
ctgggccagaagaacggcaagggcttctacgcctacgaaaccgacaagcgcggcaagccg
aagaaggtcgccgacgccaccgtgctcgacgtgctcaagccgatcgtcttcgagcagcgt
gaagtcaccgacgaagacatcatcaactggatgatgatcccgctgtgcctggagaccgtg
cgctgcctcgaagacggcatcgtcgaaaccgctgccgaagccgacatgggcctggtctac
ggcattggcttccctcccttccgcggtggtgcgctgcgctacatcgactcgatcggtgtg
gccgaattcgttgccctggccgatcaatacgccgacctggggccgctgtaccacccgacc
gccaagctgcgtgaaatggccaagaacggccagcgcttcttcaactga
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