Pseudomonas asiatica: LG197_13575
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Entry
LG197_13575 CDS
T08841
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
pasi
Pseudomonas asiatica
Brite
KEGG Orthology (KO) [BR:
pasi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pasi03032
]
LG197_13575 (topA)
03400 DNA repair and recombination proteins [BR:
pasi03400
]
LG197_13575 (topA)
Enzymes [BR:
pasi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
LG197_13575 (topA)
DNA replication proteins [BR:
pasi03032
]
Prokaryotic type
DNA Topoisomerases
LG197_13575 (topA)
DNA repair and recombination proteins [BR:
pasi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
LG197_13575 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
WDM91022
LinkDB
All DBs
Position
2966967..2969576
Genome browser
AA seq
869 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASASKEPAAKRGKAAGEA
PALSPKEKARRQLVARMGVDPDHGWKAKYEILPGKEKVIEELRRLAKDADTIYLATDLDR
EGEAIAWHLREAIGGDDTRYKRVVFNEITKKAIQEAFSQPGELDIDRVNAQQARRFLDRV
VGYMVSPLLWAKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWEIHADLGTAKNAKV
RFEVAREKGEAFKPLNEAQAMAALEKLKASSYSVVKREDRPTSSKPSAPFITSTLQQAAS
NRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADALDMARSYIEREFGKQYLPEAPLV
YGSKEGAQEAHEAIRPSDVNTHPSKLSGMERDAERLYELIWRQFLACQMPPAQYLSTSVT
VAAGDFELRAKGRILKFDGYTRVLPQQSKPGEDDVLPEMVQGEALKLIQIDPSQHFTKPP
ARFTEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVTLHNRRFYSEKMGDIVTERLSESF
SNLMDYGFTADMEENLDDVAQGERDWKNVLDEFYGDFSKKLQTAESNEDGMRANQPTMTN
IPCKECGRPMMIRTASTGVFLGCSGYSLPPKERCKATVNLVPGDEIAADDEGESESRVLL
GKHRCPICATAMDAYLLDEKHKLHICGNNPDCAGYEIEEGNYRIKGYEGPSLECDKCGSE
MQLKTGRFGKFFGCTNPACKNTRKLLKSGEAAPPKMDKVDMPELKCEKVDDTYVLRDGAS
GLFLAASQFPKNRETRAPLVLEIVPHKHEIDPKYHFLCDAPQKDPEGRPAVIRYSRKTKE
QYVQSEVDGKPTGWKAFYDGNAWKVEDKR
NT seq
2610 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcattgtggaatccccggccaaggccaagaccatcaacaagtac
ctgggcaaccagtacgtggtgaagtcgagtatcggccatatccgagacctccccaccagc
ggttcggccagcgccagcaaagagccagccgccaagcgtggcaaggccgcgggtgaggct
ccggccctgtcgccgaaggaaaaggcccgccgccagctggtggcacgcatgggcgtcgac
cccgaccacggctggaaggccaagtacgagatcctgcctggcaaggaaaaggtgatcgaa
gagctgcgccgcctggcgaaggacgccgacaccatctatctcgcaaccgacttggaccgc
gaaggggaagccattgcctggcacctgcgcgaggccatcggcggcgacgacacccgctac
aagcgcgtggtgttcaacgaaatcaccaagaaggccatccaggaagccttctcgcagccg
ggcgagctggatatcgaccgggtcaacgcgcagcaggcgcggcgtttcctcgaccgcgtg
gtcggctacatggtttcgccgctgctgtgggccaagatcgcccgtggcctgtccgccggc
cgtgtacagtcggtggcggtgaagctggtggtggagcgcgagcgtgaaatccgcgcgttc
atcccggaagagtactgggaaatccacgccgacctcggcaccgccaagaacgccaaggtg
cgtttcgaagtggcccgcgagaagggtgaggccttcaaaccgctgaacgaagcccaggcc
atggccgcgctggagaagctcaaggcttccagctacagcgtggtcaagcgcgaagaccgc
ccgaccagcagcaagccgtcggcaccgttcattacctccaccttgcagcaggccgccagc
aaccgcctgggcttcggtgtgaagaaaaccatgatgatggcccagcgcttgtacgaagcc
ggctacatcacctacatgcgtaccgactcgaccaacctgtcggccgacgccctggatatg
gcgcgcagctacatcgagcgcgagttcggcaagcagtacctgcccgaggcaccgctggtg
tacggcagcaaggaaggcgcccaggaggcgcacgaagcgattcgtccttccgacgtaaac
acccacccgagcaagctcagtggcatggagcgtgacgccgagcgcctgtatgagctgatc
tggcgccagttcctggcctgccagatgccgccggcgcaatacctgtccaccagcgtcacc
gtggctgcaggcgacttcgagttgcgtgccaagggccgtatcctcaagttcgacggttac
acccgtgtgctgccgcaacagagcaagcctggcgaagacgacgtgttgccggaaatggtc
cagggcgaagcgctgaagctgatccagatcgacccgagccagcacttcaccaagccaccg
gcgcgcttcaccgaagccagcctggtcaaggaaatggaaaagcgtggcatcggtcgcccg
tcgacctatgcggcgatcatttcgaccattcaggaccgtggctatgtgactctgcacaac
cgccgcttctattccgagaagatgggcgacatcgtcaccgagcgcctgtccgaaagcttc
tccaacctgatggactacggctttaccgccgacatggaagagaacctcgacgacgtggcc
cagggcgagcgtgactggaagaacgtgctcgacgagttctacggcgatttcagcaagaag
ctgcagactgccgagtccaacgaagacggcatgcgtgccaaccagccgaccatgaccaac
attccgtgcaaggaatgtggccggccgatgatgatccgcaccgcttccaccggcgtgttc
ctcggttgctcgggctacagcctgccgccgaaagagcgctgcaaggccaccgtcaacctg
gtgccgggcgacgagattgccgccgacgacgagggcgaatcggaatcccgcgtgttgctg
ggcaagcaccgctgcccgatctgcgccacggcgatggatgcctacctgctggacgagaag
cacaagctgcacatctgcggtaacaacccggattgcgctggctacgagatcgaggaaggc
aactaccgcatcaagggttacgaagggccgagcctggagtgcgacaagtgtggcagcgag
atgcagttgaagactggccgcttcggcaagttcttcggttgcaccaacccggcgtgcaag
aatacccgcaagctgctcaagagcggcgaggcggcgccaccgaagatggacaaggtggac
atgccagagctcaagtgcgagaaggtcgacgatacctacgtgctgcgtgatggcgcttcg
gggctgttcctggcagccagccagttccccaagaatcgcgaaacccgtgcaccgctggtg
ctggaaatcgttccacacaaacacgagattgatccgaagtaccacttcctgtgcgatgcg
ccgcagaaagacccggaaggccgccctgcagtgatccgctacagccgcaagaccaaggag
cagtacgtgcagtccgaggttgatggcaagccgaccggctggaaggcgttctacgacggc
aatgcgtggaaggttgaagacaagcgctga
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