Pseudomonas asiatica: LG197_26235
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Entry
LG197_26235 CDS
T08841
Name
(GenBank) DEAD/DEAH box helicase
KO
K05590
ATP-dependent RNA helicase SrmB [EC:
5.6.2.7
]
Organism
pasi
Pseudomonas asiatica
Brite
KEGG Orthology (KO) [BR:
pasi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pasi03009
]
LG197_26235
Enzymes [BR:
pasi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LG197_26235
Ribosome biogenesis [BR:
pasi03009
]
Prokaryotic type
rRNA helicases
LG197_26235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
ERCC3_RAD25_C
AAA_19
Motif
Other DBs
NCBI-ProteinID:
WDM88052
LinkDB
All DBs
Position
complement(5640492..5641853)
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AA seq
453 aa
AA seq
DB search
MQLNFPHLPEVTSVFSQFALHERLLKAVAELNFVEPTPVQAAAIPLALQGRDLRVTAQTG
SGKTAAFVLPLLNRLVDLRERRVEIRALILLPTRELAQQTLKQVQLFSQFTYIKSGLVTG
GEDFKEQAAMLRKVPDVLIGTPGRLLEQLNAGNLDLSHVQVLILDEADRMLDMGFAEDME
RLCKECENRQQTLLFSATTGGAALRDIIGKVLKDPEHLMLNSVSQLAEGTRQQIITADHD
QHKEQIVQWLLANETFDKAIIFTNTRALADRIYGHLVAKDVKAFVLHGEKDQKDRKLALD
RFKQGSSKVLVATDVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGGEGLAISLI
THNDWNLMSSIERYLKQQFERRVIKEVKGTYNGPKKVKASGKAAGSKKKKVEKKTGDKKA
AAKRKPTAKPKANAPLASADGLAPLKKRRPAAE
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgcaactgaattttccgcacttgcctgaggttacctccgtgttctcccaattcgccctg
catgaacgcctgcttaaagccgtggccgagcttaactttgtcgagccaaccccggtgcag
gccgcggccatccccctggccctgcaagggcgtgacctgcgcgtgaccgcgcagaccggc
agcggcaagaccgcggccttcgtgctgccgctgctcaaccgcctggtcgacctgcgcgaa
cgccgcgtcgagatccgcgcgctgatcctgctgccgacccgtgagctggcccagcagacc
ctcaagcaggtacagctgttctcgcagttcacctacatcaagtcgggcctggttaccggc
ggtgaagacttcaaggaacaggccgccatgctgcgcaaggtgccggacgtgctgatcggc
accccgggccgcctgctcgagcagctcaatgccggcaacctcgacctgtcccacgtgcag
gtgctgatcctcgacgaagccgaccgcatgctcgacatgggctttgccgaggacatggag
cgcctgtgcaaggagtgcgagaaccgccagcagaccctgctgttctccgccaccaccggt
ggtgcggccctgcgcgacatcatcggcaaggtgctgaaagacccagagcacctgatgctc
aacagcgtctcgcagttggccgaaggcacccgccagcagatcatcaccgccgaccacgac
cagcacaaagagcagatcgtgcagtggctgctggccaacgaaaccttcgacaaggcgatc
atcttcaccaacacccgcgcgctggccgaccgcatctacggccacctggtggccaaggac
gtgaaggccttcgtgctgcacggcgagaaggaccagaaggaccgcaagctggccctggac
cgcttcaagcagggcagctccaaggtgctggtggctaccgacgttgcggcccgtggcctg
gacatcgacggcctggacctagtgatcaacttcgacatgccgcgcagcggtgacgagtac
gtgcaccgcgtgggccgtaccggccgtgccggtggcgaaggcctggcgatctcgctgatc
acccacaacgactggaacctgatgtcgagcatcgagcgctacctcaagcagcagttcgag
cgccgggtgatcaaggaagtgaagggcacctacaacgggcctaagaaggtcaaggcctcg
ggcaaggcggctggcagcaagaagaaaaaggtcgagaagaagaccggtgacaagaaggcg
gccgccaagcgcaagccaaccgccaagccgaaggccaatgcaccgctggccagcgctgac
ggcctggcgccgctgaagaagcgcaggcctgcggctgagtaa
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