KEGG   Pseudomonas asiatica: LG197_27955
Entry
LG197_27955       CDS       T08841                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
pasi  Pseudomonas asiatica
Brite
KEGG Orthology (KO) [BR:pasi00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:pasi03400]
    LG197_27955
Enzymes [BR:pasi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     LG197_27955
    5.6.2.6  RNA 3'-5' helicase
     LG197_27955
DNA repair and recombination proteins [BR:pasi03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    LG197_27955
SSDB
Motif
Pfam: DEAD_assoc DEAD WH4_Lhr WH_Lhr Helicase_C WH3_Lhr ResIII Cas3-like_C_2 HTH_5 HTH_IclR AAA_25 HTH_9
Other DBs
NCBI-ProteinID: WDM88363
LinkDB
Position
6003573..6007841
AA seq 1422 aa
MNLPAKHHPVLELFHPAVRTWFRRHFATVTDAQAQAWPLTHAGKSMLLAAPTGSGKTLSA
FLAVLDELFRQGLEHQGELPAQTQVVYVSPLKALSNDIRLNLQAPLEGISQAIADQGLNA
PRITTAVRSGDTPQKERAAMRKLAPHILVTTPESLYVLMGSASGRKGLASVHTVIIDEIH
ALAGNKRGAHLALTLERLQALCNRPLRRIGLSATQRPVERVAQFLVGNSRPCAIVDVGHA
RQRDLAIEVPPVPLGAVMATDVWGLVYDRLATLAREHRTTLVFVNTRRLAERITRHLSDR
LGKEAVAAHHGSLAKELRLDAEQRLKNGQLQVLVATASLELGIDIGDIDLVCQIASPGSI
AAFLQRVGRAGHQVDGVPKGRLFPTSRDDLIECVALLDCIRRGELDELHIPRAPLDVLAQ
QIVAEASNQPWHEQALFDCLRQATPYAELDQQHYQALLRMLAEGYNGRQGVRSAYLHRDA
VSGTLRGRRGSQLTALTSGGTIPDNADYAVLLEPQALNIGSVNEDFAVESIAGDIFQLGN
ASYRILRVEPGRVRVEDAHGLPPTIPFWLGEAPGRSDELSAAVARLQAQIDQQLADNNQA
EVLAWLQATFELGEAAAGQLLDYLARTREVLGALPSQDTLVMERFFDESGGTQLIIHSPY
GSRINRAWGLALRKRFCRTFNFELQAAASEDAIVLSLSSSHSFELDDVWRYLNSRNAESI
LVQALLDAPLFGVRWRWNASVTMALPRFVGGRKVAPQIQRMKSEDLIAAVFPDQIACLEN
IVGERQIPDHPLVEQTLDDCLHEAMDSEGWLALLRRMESGTVRLLCRDLPAPSPLAAAIL
NARPYAFLDDAPLEERRTQAVLNRRWNEVQNGDDLGALDADAIAAVTAEAWPQPGNADEM
HEALMGLGAISQDEVQGNAGWELLLRQLAKAGRALRLVDEKLWLARERLSLLQVLYPGSR
LEPALQVLPGFDQAIEPDIALVELLRARLSGHGPLTRAQIAAALGKPLPAIEQALTCLEA
EGYVLRGHFSPGASELQWCERHLLARIHRYTVKRLRREIEPVSLQDFMRFLFDWQHLADD
TRLRGPQAVAEVLGQLQGFPSAAGAWEAELLPARIKDYSPNWLDDACRSGQFAWSRLAAT
VSSNTLSSTPLVLLPREHLGLWRSLAPVPALDSLGARAQRVHEVLNAHGALFFDELAHDA
HLLPSELETALQELVGAGLVGADSFTGLRSLITPAAKRTSRNSRRGHPPLSSSMSHAGRW
ALLRRGTVDDSQRLEHIARALLRRYGVVCWRLLERESDVLPPWRELLRCYHRLEARGEIR
GGRFIAGLAGEQFALPEAVGLLRQVRRRELDGALVVVSASDPLNLVGSLLPGAKVPAVSG
NRLLYRDGVPVAVRVAGHYSYLVEAPAQEQESWRQKLLRDTI
NT seq 4269 nt   +upstreamnt  +downstreamnt
atgaacctgcccgccaaacaccacccggtgctcgagctgttccaccccgccgtgcgcacc
tggttccgtcgccacttcgccacggtgaccgatgcccaggcccaggcctggccgttgacc
catgcgggcaagtcgatgctgctagccgcaccgaccggctcgggcaagaccctcagtgcg
ttcctggccgtgctcgacgaactgttccgccaaggcctggagcaccaaggcgagctacca
gcgcaaacccaggtggtctacgtttcgccactcaaggcgctgtccaacgatatccgcctg
aacctgcaagccccgctcgaaggcatcagccaggccatcgcggaccagggcctgaacgcc
ccgcgcatcaccacggccgtgcgcagcggcgacaccccgcagaaggagcgtgccgccatg
cgcaagctggcgccgcacatcctggtgaccacccccgaatcgctctacgtgctgatgggc
tcggcttctggccgtaaaggcctggccagcgtgcacaccgtgatcatcgacgaaatccat
gccctggccggcaacaagcgcggcgcccacctggcactgaccctggagcgcctgcaggcc
ctgtgcaaccggccgttgcggcgcatcggcctgtcggccacgcaacgcccggtagagcgg
gtggcgcaatttctggtcggcaacagccgcccctgcgcaatcgtcgatgtcggccacgct
cggcagcgcgacctggccatcgaggtgccgccagtgccgctgggtgcagtgatggccacc
gatgtctggggcctggtctatgaccgcctggccaccctggcgcgcgaacaccgcaccacc
ctggtgttcgtcaacacccgacggctggccgaacgcatcacccgccacctcagcgaccgc
ctgggcaaggaggcggttgccgcgcaccacggcagcctggccaaggaactacgcctggat
gccgaacaacgccttaagaatggccagttgcaggtgctggtggccaccgcatcgctggag
ctgggcatcgatatcggcgacatcgatctggtctgccagatcgcttcaccaggttcgata
gcggcctttctgcagcgggtcggccgcgccggccaccaggtcgatggcgtgcccaagggc
cgcttgttcccgacctcgcgtgatgacctgatcgaatgcgtggccctgctcgactgcata
cgccggggcgagctggacgagctgcacattccccgggcgccgctggacgtgctggcccag
cagatcgtcgccgaagccagcaaccagccctggcacgaacaagccctgttcgactgcctg
cgccaggccacgccctatgccgaactcgaccagcaacattaccaggccctgctgcgcatg
ctcgccgagggctataacggccgccaaggcgtgcgcagtgcctacctgcaccgcgatgcg
gtgagcggcaccctgcgtggccgccgcggcagccagctgaccgccctgaccagcggcggc
accatccccgacaacgccgactacgccgtgctgctcgaaccgcaggcgctgaacatcggc
agcgtcaacgaagactttgcggtggaaagcatcgccggcgatatcttccagctgggcaat
gcttcctatcgcatcctgcgcgtcgaaccgggccgggtgcgggtggaggatgcccatggc
ctgccaccgaccattccattctggctgggcgaggcgccggggcgcagcgatgagctgtct
gccgcggtggcccggctgcaggcacagatcgaccaacagctggctgacaacaaccaagcc
gaggtgctggcatggttgcaggccaccttcgaactgggcgaagccgccgctggccagttg
ctcgactacctggcccgcacccgcgaagtgcttggtgccctgccctcgcaggacacgctg
gtgatggagcgcttcttcgatgagtccggcggtacccagttgatcatccattcgccctac
ggcagccgcatcaaccgcgcctggggcctggccctgcgcaagcgcttctgccgcaccttc
aacttcgagttgcaggcggcggccagcgaggacgccatcgtgctgtcgctgtcctccagc
cacagcttcgaactggacgacgtgtggcgttacctgaatagccgcaacgccgagtcgatc
cttgtccaggcactgctcgatgcgccgctgttcggcgtgcgctggcgctggaacgccagc
gtgaccatggccttgccgcgctttgtcggcggtcgcaaggtggcgccacagatccagcgg
atgaagagtgaagacctgattgctgccgtgttccccgaccagatcgcctgcctggagaac
atcgtcggcgagcggcagattcccgatcatccgctggtcgagcaaaccctcgacgactgc
ctgcacgaggcgatggacagcgaaggctggctagcacttttgcggcgcatggaaagcggc
acggtacgcctgctgtgccgcgatctacccgccccttcgccgttggcggcggccatcctc
aatgctcggccatatgccttcctggatgacgcgccactggaagagcgtcgcacgcaggca
gtgctcaaccggcgctggaacgaggtgcagaacggcgacgacctgggcgcgctggacgcc
gatgcgattgccgccgtgacggccgaggcctggccgcagccgggcaacgccgacgaaatg
catgaagcgttgatgggcctgggtgccatcagccaggacgaagtgcagggcaatgccggt
tgggaactgctgctcagacaattggccaaggccggccgggccttgcgcctggtggatgaa
aaactgtggctggcacgcgagcggttgagtctgctgcaggtgctgtatcccggctcccgg
ctggaacctgcgttgcaggtactgccaggcttcgatcaggccatcgagccggacattgcg
ctggtcgaactgttgcgagcccgcctgagcggccatggcccgctgacccgcgcgcagatt
gcggcagcacttggcaaaccgctgccggccatcgaacaggccctgacctgcctggaggcc
gaaggctatgtgctgcgtgggcatttcagccccggcgcaagcgaactgcaatggtgcgaa
cgccatctgcttgcgcgcatccaccgctacacggtcaaacgcctgcgccgggagatcgag
ccggtcagcctgcaggacttcatgcgctttctgttcgactggcagcacctggctgacgac
acgcgcctgcgcggcccgcaagccgtggccgaggtactaggccagttacaaggattcccg
agtgccgccggagcatgggaggccgaactgctgccagcacgtatcaaggactacagcccg
aactggctcgacgatgcctgccgtagcgggcagttcgcctggagccggctggcggcgacc
gtgtcgagcaacaccttgtcgagcacaccgctggtgctgctgccgcgcgagcatcttggg
ttgtggcgcagccttgcccccgtacccgccctggatagcctcggcgcacgagcgcaacgc
gtccacgaggtgctgaacgcgcatggcgcgctgttcttcgacgagctggcacacgacgcc
cacctactacccagcgaactggagacggccttgcaagagctggtaggcgcaggcctggtg
ggggccgacagcttcaccggcctgcgcagcctgatcaccccggcggcgaaacgcacatcg
cgcaacagccgacgcggccacccgccgctgtccagcagcatgtcccatgccgggcgctgg
gccttgctgcgcaggggcactgtagacgacagccagcgcctggagcacatcgcccgggcc
ctgcttcggcgctatggcgtggtgtgctggcgcctgctggagcgcgaaagcgatgtgctg
ccgccctggcgcgaactgctgcgctgctatcaccggctggaagcgcgtggcgagattcgt
ggcgggcgcttcattgccgggctggccggcgaacagttcgccttgccggaggcggtgggg
ctgctgcggcaggtgcggcggcgtgaattggacggggcattggtggtggtgagtgccagt
gacccactgaacctggtcgggtcgttgctgccgggggcgaaagtgccggcggtgagcggc
aaccgcctgttgtaccgcgacggggtgccggtggcggtgcgggtagccgggcactattca
tacctggttgaagcgccggcacaagagcaggaaagctggcggcagaagctgctgcgcgac
accatctga

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