Pseudomonas asiatica: LG197_28455
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Entry
LG197_28455 CDS
T08841
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
pasi
Pseudomonas asiatica
Pathway
pasi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pasi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
LG197_28455 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pasi03400
]
LG197_28455 (sbcB)
Enzymes [BR:
pasi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
LG197_28455 (sbcB)
DNA repair and recombination proteins [BR:
pasi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
LG197_28455 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
LG197_28455 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LG197_28455 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
WDM88456
LinkDB
All DBs
Position
complement(6119253..6120686)
Genome browser
AA seq
477 aa
AA seq
DB search
MTSSIFWHDYETTGINPRCDRPLQVAGVRTDFDLNEIDEPISLYCRPSDDILPHPAACLV
TGITPHLLAEQGLCEAEFMTRVHAQLAHPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAR
EWQGGNSRWDLIDIVRTAYALRPDGIEWPQQDGRTSLRLELLSKANGIDHGHAHEALSDV
RATIALARLIRQKQPKLYDWLFQLRSKHKVMEQISLLQPLVHISGRFSAARNYLGVVLPL
AWHPRNRNALIVCDLHQETLPLLRESAEVLRQRLYTRHEELAEGELPVPLKLVQINRCPV
LAPLSVLRPADQQRLGLDLTLLQLRGEELAEQQAQWQDKLEHIYGKEDFAPSEDPEQQLY
DGFLGDRDRRLCEQVRALEPAQLSRGQWMFDDPRLPELLFRYRARNFPETLSGEERQRWF
SFCQQRLSDPQWGAPNTLGDFEQARQQAWEGADDAGRRVLDAWQVHARQLQAQYAVG
NT seq
1434 nt
NT seq
+upstream
nt +downstream
nt
gtgacctccagcattttctggcacgactacgaaaccaccggcatcaacccgcgttgcgac
cggccgctgcaggtggccggcgtgcgcaccgacttcgacctcaacgaaatcgacgagccg
ataagcctttattgtcggccctccgacgatatcctgccgcacccggcggcttgcctggtg
accggcatcaccccgcacctgctggccgagcagggtttgtgcgaagcggagttcatgacc
cgggtgcatgcgcaactcgcgcaccctggtacctgcggtgccggctacaacaccctgcgc
ttcgacgacgaagtgacccgttacagcctgtaccgcaactttttcgacccttatgcccga
gagtggcagggcggcaacagccgctgggacctgatcgacatcgtgcgcacggcctatgca
ctgcgcccggacggcatcgagtggccgcaacaggacgggcgcaccagcctgcgtcttgaa
ctgctgagcaaggccaatggcatcgaccacgggcatgcccacgaagcgctttccgacgtg
cgggcaaccatcgccctggcccgcctgatccgacagaaacagcccaagttgtatgactgg
ctgtttcaattgcgcagcaagcataaagtgatggagcagatcagtttgttgcagccactg
gtgcatatatccgggcgcttctcggcggcacgcaattaccttggtgtcgtattgccactg
gcctggcacccgcgtaatcgcaatgcactgattgtgtgcgacctgcatcaggaaacccta
ccgttactacgggaaagtgctgaagttctacgccagcgtttgtatacccgccatgaagaa
ctggccgaaggcgaattacccgtgccgctcaaattggtgcagatcaatcgctgcccggta
ctggcgccactttcggtattgcgcccggccgatcaacaacggttgggcctggacttgacg
ttgttacaattgcgcggcgaagaattggccgagcaacaggcgcaatggcaagacaagctg
gaacacatctacggcaaggaagactttgccccgagtgaagacccggaacaacaattgtat
gacggttttctgggggaccgtgaccgccgcttatgcgagcaagttcgtgcactggagccg
gcgcagttgagccgtgggcagtggatgttcgatgacccgcgcctgcctgaactgttgttc
cgctatcgggcgcgcaacttccccgagaccctgagcggcgaagagcggcaacgctggttc
agcttctgccagcaacgcctgagcgacccgcagtggggcgcgccgaatacgctgggcgac
ttcgaacaggcgcggcagcaagcctgggagggcgctgacgatgccgggcggcgtgtgctg
gatgcctggcaggtacatgcccggcaattgcaggcacagtatgcagttggctga
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integrated database retrieval system
