Pseudomonas alabamensis: APT63_19335
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Entry
APT63_19335 CDS
T12030
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
pass Pseudomonas alabamensis
Pathway
pass03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pass00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
APT63_19335 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pass03021
]
APT63_19335 (rho)
03019 Messenger RNA biogenesis [BR:
pass03019
]
APT63_19335 (rho)
Transcription machinery [BR:
pass03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
APT63_19335 (rho)
Messenger RNA biogenesis [BR:
pass03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
APT63_19335 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
AAA_25
AAA_22
S1CSD-TOTE-2
NACHT
Motif
Other DBs
NCBI-ProteinID:
AMA47616
LinkDB
All DBs
Position
complement(4510365..4511624)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKQKPITDLLEMAEQMGIENMARSRKQDVIFSLLKKHAKSGEEISGDGVLEILQD
GFGFLRSADASYLAGPDDIYVSPSQIRRFNLRTGDTIVGKIRPPKEGERYFALLKVDTIN
FDRPENAKNKILFENLTPLFPNQRLKMEAGNGSTEDLTGRVIDLCAPIGKGQRGLIVAPP
KAGKTIMLQNIAANITRNNPECHLIVLLIDERPEEVTEMQRTVRGEVVASTFDEPPTRHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIYEEFKGTGNMELPLDRRIAEKRVFPAINI
NRSGTRREELLTADDELQRMWILRKLLHPMDEIAAVEFLVDKLKQTKTNDEFFLSMKRK
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaacctgactgaactcaagcaaaagccgattaccgatctgctggaaatggccgaacag
atgggcatcgaaaacatggcccgttcgcgcaagcaggacgtgattttctccctgctgaaa
aaacacgcgaagagcggcgaagagatctcgggtgacggcgtgctggagattctccaggat
ggtttcggtttcctgcgttccgccgatgcgtcgtacctggccggcccggacgacatctat
gtctcgcccagccagatccgccgcttcaacctgcgtaccggcgacaccatcgtgggcaag
atccgcccaccgaaagagggcgagcgctacttcgcgctgctgaaggtcgacaccatcaac
ttcgaccgcccggaaaacgccaagaacaagattctcttcgagaacctgacgccgctgttc
cccaaccagcgcctgaagatggaagccggcaacggttccaccgaagacctcaccggtcgt
gtgatcgacctgtgcgcaccgatcggcaagggccagcgtggcctgatcgtcgcgccgccg
aaggcgggcaagaccatcatgctgcagaacatcgctgccaacatcacgcgtaacaaccct
gagtgccacctgatcgtcctgctgatcgacgagcgcccggaagaagtcaccgagatgcag
cgtaccgttcgcggtgaagtggtcgcctcgaccttcgacgagccgccgacccgtcacgtg
caggtcgccgagatggtgatcgagaaggccaagcgcctggtcgagcacaagaaggacgtg
gtcatcctgctcgactccatcactcgtctggcccgtgcctacaacaccgtcatcccaagc
tcgggcaaggtgctgaccggtggtgtggacgcccatgccctggagaagccgaagcgcttc
ttcggtgccgcgcgtaacatcgaggaaggcggctcgctgaccatcatcgccaccgcgctg
gtcgagaccggttcgaagatggacgaggtgatctacgaggagttcaagggtaccggcaac
atggagctgcccctggaccgccgaatcgctgaaaaacgcgtgttcccggccatcaacatc
aaccgctccggtacccgtcgcgaagagctgctgaccgccgacgacgagctgcagcgcatg
tggatcctgcgcaagctgctgcacccgatggacgagatcgccgccgtcgagttcctggtc
gacaagctcaagcagaccaagaccaacgacgagttcttcttgtcgatgaagcgcaagtaa
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