Pseudomonas asturiensis: N015_10625
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Entry
N015_10625 CDS
T08470
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
past
Pseudomonas asturiensis
Brite
KEGG Orthology (KO) [BR:
past00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
past03032
]
N015_10625 (topA)
03400 DNA repair and recombination proteins [BR:
past03400
]
N015_10625 (topA)
Enzymes [BR:
past01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
N015_10625 (topA)
DNA replication proteins [BR:
past03032
]
Prokaryotic type
DNA Topoisomerases
N015_10625 (topA)
DNA repair and recombination proteins [BR:
past03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
N015_10625 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
QHF02841
LinkDB
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Position
2370803..2373415
Genome browser
AA seq
870 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGNQYVVKSSIGHIRDLPTSGSASAAKEPAAKRGKAAAGE
GPVLTPKEKAQRQLVSRMGVDPEHGWKAKYEILPGKEKVIEELRKLAKDADTIYLATDLD
REGEAIAWHLREAIGGDDSRYKRVVFNEITKKAIQEAFSRPGELDIARVNAQQARRFLDR
VVGYMVSPLLWQKVARGLSAGRVQSVAVKLVVEREREIRAFNPEEYWEIHADLGTAKGAN
VRFEVARENGEAFKPLNEAQAMAALEKLKASSYSIVKREDKPTSSKPSAPFITSTLQQAA
SNRLGFGVKKTMMMAQRLYEAGYITYMRTDSTNLSADAVSMARDYIETEFGKKYLPESPN
VYSSKEGAQEAHEAIRPSDVNMHPSKLSGMERDAERLYELIWRQFVACQMPPAQYLSTTV
SVAASDFELRAKGRILKFDGYTRVLPQMAKPGDDDVLPDMAQGETLKLNKLDPTQHFTKP
PARYSEASLVKEMEKRGIGRPSTYAAIISTIQDRGYVALHNRRFYSEKMGDIVTGRLSES
FANLMDYGFTAGMEENLDDVAQGQRDWKNVLDEFYGDFRKKLEVAEAPDGGMRANQPVMT
DIPCKVCGRPMQIRTASTGVFLGCSGYSLPPKERCKATVNLTPGDEIAEDDEGESESRVL
RGKHRCPICSTAMDAYLLDENHKLHICGNNPDCTGYEIEKGTYRIKGYEGPSLECDKCGS
EMQLKTGRFGKFFGCTNSDCKNTRKLLKSGDAAPPKMDPVKMPELKCDKVDDTYILRDGA
SGLFLAASQFPKNRETRAPLVIEIAPHKDEIDPKYHFLCEAPKKDPDGRPSVIRYSRKTK
EQYVQTEVEGKPTGWRAFYDGSAWKVEDKR
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgggcaaatcgctggtcatcgtggaatccccggctaaggccaagaccatcaacaagtat
ttgggcaaccagtacgtggtgaagtcgagtatcggccatatccgagacctgcccaccagc
ggttcggccagtgctgccaaagagcctgccgccaagcgtggcaaggccgccgctggcgag
ggcccggtactgacgccgaaagaaaaggcgcagcgccagctggtatcgcgcatgggcgtc
gatccggagcatggctggaaagccaagtacgaaatccttcccggcaaggagaaggtgatc
gaagagctgcgcaagctcgccaaggatgctgacaccatctatctcgcgacggacttggac
cgcgaaggggaagccattgcctggcacctgcgcgaagccatcggtggcgatgacagccgc
tacaagcgcgtggtgttcaacgaaatcaccaagaaagccattcaagaggctttctccagg
cccggcgagctggatattgcccgggtcaacgcccagcaggcgcgtcgcttcctggaccgc
gtcgtcggttacatggtctctccattgttgtggcagaaggttgcgcgtggcctgtcggca
ggtcgtgtgcagtcggttgccgtgaaactggtggtggagcgtgagcgcgagattcgtgct
ttcaatcccgaagagtattgggaaatccacgctgacctgggcactgccaaaggcgccaac
gtgcgtttcgaagtcgcccgtgaaaacggtgaggccttcaagccgctgaacgaagcgcag
gccatggcggcactggaaaagctaaaggcttccagctacagcatcgtcaagcgcgaagac
aagccgaccagcagcaagccgtccgcgccctttattacgtcgaccctgcagcaggccgcg
agcaaccgcctgggcttcggtgtgaagaagaccatgatgatggctcagcgcttgtacgag
gctggctatatcacctatatgcgtaccgactcgaccaacctgtcggctgacgcggtaagc
atggcgcgcgattacatcgaaaccgagttcggcaagaagtacctgccggaatcgccgaac
gtgtacagcagcaaggaaggcgcacaggaggcgcacgaagcgattcgtccttccgacgtc
aacatgcatccctccaagctttcgggcatggagcgcgacgccgagcgcctttatgagctg
atctggcgccagttcgtcgcttgccagatgccgcctgcgcaatacctgtcgaccactgtc
agcgttgcagcgagcgatttcgagctgcgcgccaagggccgcatcctcaaatttgacggt
tacacccgtgtactgccgcagatggccaagcctggcgatgatgacgtgctaccggacatg
gcgcagggtgaaaccctgaagcttaacaagctcgatccgacccagcacttcaccaagccg
cctgcgcgttactctgaagcgagcctggtcaaggaaatggaaaagcgcggtatcggtcgt
ccgtcgacttacgcggcgattatttcgaccatccaggatcgtggctatgtagcgctgcat
aaccgccgcttctactctgaaaagatgggtgacatcgtcacaggacgtctgtcggagagc
tttgccaacctgatggactacggctttaccgccggcatggaagaaaacctcgacgacgtc
gcccagggccagcgcgactggaaaaatgtgctggacgagttctacggcgatttccgcaag
aagctggaagtggccgaagcgcctgacggcggcatgcgtgccaatcagccggtcatgacc
gatatcccgtgcaaggtctgcgggcgtccgatgcagatccgtaccgcctcgacaggtgtg
ttcctgggctgctccggctacagcctgccgcccaaggagcgctgcaaggcgaccgtcaac
ctgacgcctggcgacgagattgccgaggatgacgagggtgaatcggagtccagggttctg
cgtggcaagcatcgctgcccgatctgcagcacggccatggacgcttatctgctcgacgag
aaccacaagctgcatatctgcggtaacaacccggattgcacaggttacgagatcgagaag
ggcacctaccggatcaagggctacgaaggtccgagtctggagtgcgataagtgcggcagc
gaaatgcagctcaagaccggccgtttcggcaagttcttcggttgtaccaattctgactgc
aagaatacccgcaagctgctcaagagcggcgatgcggcgccgccgaagatggatccggtc
aagatgccggaactcaagtgcgacaaggtcgatgacacctatattctgcgtgacggcgct
tcggggctgttcctggccgcaagccagttcccgaaaaaccgtgaaacccgcgcaccgttg
gtcatcgagattgcaccgcacaaggacgagattgatcccaagtatcatttcctctgcgaa
gcgccgaagaaggacccggatggccgtccgtcggtgatccgttacagccgcaagaccaag
gagcagtacgtgcagaccgaggtcgaaggcaagcctaccggctggcgcgcgttctatgat
ggcagcgcctggaaggtcgaagacaagcgttga
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