Pseudomonas asturiensis: N015_19115
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Entry
N015_19115 CDS
T08470
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
past
Pseudomonas asturiensis
Pathway
past03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
past00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
N015_19115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
past03019
]
N015_19115
03009 Ribosome biogenesis [BR:
past03009
]
N015_19115
Enzymes [BR:
past01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
N015_19115
Messenger RNA biogenesis [BR:
past03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
N015_19115
Ribosome biogenesis [BR:
past03009
]
Prokaryotic type
rRNA helicases
N015_19115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
HEM4
BscB_a-b
Motif
Other DBs
NCBI-ProteinID:
QHF04398
UniProt:
A0ABX6HGB2
LinkDB
All DBs
Position
complement(4310926..4312590)
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AA seq
554 aa
AA seq
DB search
MTQEIGGFAALELHPNIVAAVVATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPET
RQTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLLVHADQKTSAVLSLL
EVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIESLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPDAQAVLDARIKKLTNSLSPLVADAESTHGDLLDRLTADIGCTPRAL
AAALLRKATNGQALTLAAIERERPLVPNNAPRGDRPERSGDRPERERRAPVPLAEGRARC
RTALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEDGLERLLTKLKDTR
VAGKQLKLRRYRED
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaatcggcggcttcgccgctctcgaacttcatcccaatatcgttgcagct
gtcgtcgccactggctacgaagagccttcggccattcagcagcaatcgatcccgatcatt
ctcgccggtcacgacatgattggtcaggcacaaaccggtacgggtaaaaccgctgctttc
gcactgcctatcctgcatcgcatcgacccgagcaagcgcgagccgcaagcactgatcctg
gccccgacccgcgagctggcacttcaagttgccaccgcgttcgagacctacgcaaaacaa
atgccgggcgtgaccgttgtagcggtctacggcggcgcgcctatgggccctcagctcaag
gccatccgcaacggcgcacaaatcgtcgtcgctaccccgggccgtctgtgcgatcacctt
cgccgtgacgaaaaagtcctggcgaccgtgaaccacctggttctcgacgaagcggacgaa
atgctgaagctgggcttcatggacgacctggaagtgatcttcaaggctatgcctgagacc
cgccagaccgttctgttctcggccacactgccacagtcgatccgtgccatcgccgaacgc
cacctgcgcgatccgaagcacgtcaagatccagaccaagacccagaccgttaccgcgatc
gagcaggctcacctgctggttcacgctgaccagaagacctcggctgttctgagcctgctg
gaagtcgaagacttcgacgccctgatcatgttcgtccgcaccaagcaggcgacccttgac
ctggcaagtgcactggaagccaaaggctacaaggctgctgcactgaacggcgacatcgct
cagaaccagcgtgagcgcgtcatcgaatccctcaaggatggccgtctggacatcgtggta
gcgaccgacgttgctgctcgtggtcttgacgttccgcgtatcactcacgtgttcaacgtg
gacatgccttacgatccagagtcctacgttcaccgtatcggccgtaccggccgtgcaggt
cgcgaaggccgtgcgctgttgctggttacgccgcgtgagcgtcgcatgctgcaggttatc
gagcgtgtgactggtcagaaggttgcggaagtccgcctgccggatgcccaggctgtgctg
gatgcccgtatcaagaagctgaccaacagcctgtcgccactggttgccgacgctgagtcg
acccatggtgatctgctggatcgtctgactgccgacatcggttgcacgccgcgtgcactg
gctgccgctctgctgcgcaaggcgaccaatggtcaggccctgactctggctgccatcgag
cgtgagcgcccactggttccgaacaatgccccgcgtggcgatcgtccggagcgcagcggt
gaccgtccagagcgtgagcgtcgtgcgccggttccattggctgaaggccgtgctcgttgc
cgtaccgcgctgggtgcgcgtgatggtatcgctgccaagaacctgctgggtgccatcctc
aacgaaggcggcctggcccgcgaagccatcggccgtattcaggtccgtgacagcttcagc
ctggtcgaactgccggaagatggtcttgagcgtctgctgaccaagctcaaggacacccgc
gttgccggtaagcagctgaagctgcgtcgctatcgcgaggattga
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