Pseudomonas asturiensis: N015_21255
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Entry
N015_21255 CDS
T08470
Symbol
sbcB
Name
(GenBank) exodeoxyribonuclease I
KO
K01141
exodeoxyribonuclease I [EC:
3.1.11.1
]
Organism
past
Pseudomonas asturiensis
Pathway
past03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
past00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
N015_21255 (sbcB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
past03400
]
N015_21255 (sbcB)
Enzymes [BR:
past01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.1 exodeoxyribonuclease I
N015_21255 (sbcB)
DNA repair and recombination proteins [BR:
past03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA exonucleases
N015_21255 (sbcB)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
N015_21255 (sbcB)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
N015_21255 (sbcB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_X-T_C
RNase_T
Motif
Other DBs
NCBI-ProteinID:
QHF04793
LinkDB
All DBs
Position
complement(4780272..4781702)
Genome browser
AA seq
476 aa
AA seq
DB search
MTSSIFWYDYETTGINPRNDRALQMAGIRTDAQLNEIAPPVNLYCQPSDDILPHPAACVI
TGITPATLAEKGLCEADFMTRVHAELSAPGTCGAGYNTLRFDDEVTRYSLYRNFFDPYAR
EWQGGNSRWDLIDVVRAAYALRPDGIVWPEEGGRVTLKLERLTAANGIDHGQAHDALSDV
RATIALARLVREKQPRLYDYLFTLRSKQKVLDQIRLMQPLVHISGRFSAARNYLGVVLPL
AWHPHNRNALIVCDLYQDPSPLLEHDAETLKQRLYTRHDALAEGELPVPLKLLHINRCPV
VAPLGVLRPEDQERLQLDMASYQDRALRLREGQEVWQEKLHVLYGKDDFVASEDPEQQLY
DGFIGDRDRRLCEQVRSAEPEQLARDAWPFDDARLPELLFRYRARNFPETLSAEEQQRWR
DFCQTRLHSPEAGAPNTLQGFTKALVELSLNAKPEQLEVLRQWQDYVQLLRTRLGT
NT seq
1431 nt
NT seq
+upstream
nt +downstream
nt
gtgacctccagcatcttctggtacgactacgaaaccaccgggatcaacccgcgcaatgat
cgagcgctgcagatggccggtattcgcaccgatgcccagctcaacgaaatcgcgccaccg
gtcaatctttactgccagcccagcgacgatattctgccgcaccctgccgcttgcgtgatc
accggaatcaccccggccacactggctgagaaaggattgtgcgaagccgatttcatgacg
cgggtgcatgccgaactctcggctcccggcacctgtggcgctggctacaacacgttgcgg
ttcgacgatgaagtgacgcgttacagtctttatcgcaactttttcgacccttacgctcgc
gagtggcagggcggaaacagtcggtgggacctgatcgacgtcgtgcgcgcagcctatgcg
ttgcggcctgacgggatcgtctggcccgaggaaggcgggcgcgtcacattgaagctcgaa
cgtctcacggcggccaatggcatcgatcacggccaggcccacgatgcgttgtccgatgtg
cgtgcaactattgcgctggcgcggctggttcgtgaaaaacaacccaggctgtatgactat
ttgttcacactgcgcagtaaacagaaggttctggatcagattcgtctgatgcagccgctg
gtgcatatctcgggacgtttttctgctgcccgtaattacctcggggtggtgttgcctctg
gcctggcatccgcataatcgcaatgcactgatcgtgtgcgatttatatcaagacccttct
ccgttactcgagcatgacgctgaaacgctgaagcaacgcttatatacccgccatgacgcg
ctggccgagggcgagctaccggtcccgctcaaactattgcatataaatcgctgcccggtg
gttgctccactgggtgtgctgcgccccgaagatcaagagcgtttgcaactggacatggcg
agctatcaggaccgcgcgttgcgattgagagaaggtcaggaagtttggcaggaaaaacta
cacgtgctttacggcaaggatgatttcgtcgccagtgaagatcccgagcagcaattgtat
gacggatttatcggcgatcgggatcgccggctttgtgaacaagttcgcagtgcagagccc
gagcaactggcgcgtgatgcatggccatttgacgatgcgcgcttgcccgagttgttgttt
cgctatcgggcccgcaactttccagagaccctgagcgctgaagagcaacagcggtggcgt
gatttttgtcagacacgattgcacagccctgaagcgggtgcgccgaatactttgcagggc
ttcaccaaagcgcttgtggagttgtcgcttaatgccaagccagagcagttggaggtgctt
aggcagtggcaggactatgtccagctgctgcgcacccgactgggtacctga
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