Pseudomonas asturiensis: N015_22040
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Entry
N015_22040 CDS
T08470
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
past
Pseudomonas asturiensis
Pathway
past02020
Two-component system
past02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
past00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
N015_22040
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
N015_22040
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
past03021
]
N015_22040
Transcription machinery [BR:
past03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
N015_22040
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
CCDC14
HTH_IclR
TrmO_C
HTH_21
Motif
Other DBs
NCBI-ProteinID:
QHF04942
UniProt:
A0AA92IWK2
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All DBs
Position
4952780..4954273
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AA seq
497 aa
AA seq
DB search
MKPSLVLRMGQQLTMTPQLQQAIRLLQLSTLDLQQEIQEALESNPMLERQEEGDDFDNSD
PLADNIEQKPNPDVQEPTYQESAPTVDNLEDGEWSERIPNELPVDTAWEDIYQTSASSLP
SNDDDEWDFTTRTSVGESLQSHLLWQLNVAPMSDKDRLVAVTLIDCINNQGYLDETLEEI
LESFDPELDIELDEIEAVLHRIQQFEPAGIGARNLSECLLLQLRQLPAKTPWLAEAQRLV
TDYIDLLGSRDYGQLMRRMKLKEDELRQVIELVQSLNPRPGSQIESTEAEYVVPDVIVRK
DNERWLVELNQESVPRLRVNPQYAGFVRRADTSADNTFMRNQLQEARWFIKSLQSRNETL
MKVATQIVEHQRGFLEYGDEAMKPLVLHDIAEAVGMHESTISRVTTQKFMHTPRGIYELK
YFFSSHVSTSEGGECSSTAIRAIIKKLVAAENQKKPLSDSKIAGLLEAQGIQVARRTVAK
YRESLGIAPSSERKRLM
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccatcgctagtcttgagaatgggccagcagctgacgatgacaccgcagctgcaa
caggcaatccgcttacttcagttatccactctggacctccagcaggagattcaggaggcg
ctggaatctaaccctatgctggaacgtcaggaagaaggcgacgatttcgacaattccgac
cctctggctgacaacatcgagcaaaaacccaatcccgacgtccaggaaccgacctatcag
gagtctgcccccaccgtagacaaccttgaagacggtgagtggagcgaacgcattcccaac
gagctgcctgtcgataccgcctgggaagatatctaccagaccagcgccagcagcctgcca
agcaacgacgatgatgagtgggacttcaccacccgcacctctgtcggtgaaagcctgcaa
agccacttgctgtggcagctcaacgtggccccgatgtccgacaaggatcgtctggtcgcc
gtaacgctgatcgactgcatcaacaatcaaggctatctggacgagaccctcgaagagatt
cttgaatccttcgatcccgaactggatatcgaactggatgaaatcgaagcggtcctgcat
cgcatccagcaattcgaacccgcaggcataggcgcgcgtaacctgagcgaatgcctgctg
ctgcaattgcgtcaattgcctgccaaaaccccgtggcttgccgaagcgcagcgtctggtg
accgattacatcgacctgttgggcagccgcgattacggccagctgatgcgccgcatgaag
ctcaaggaagacgagcttcgccaggtcatcgaactggtccaaagcctcaatccacgtccg
ggctcgcagatcgaatccaccgaagccgaatacgtagtacccgatgtcatcgtgcgcaag
gacaacgaacgctggctggtcgaactgaaccaggagtcggttccccgtcttcgcgtcaat
ccgcaatacgcaggattcgtgcgtcgcgccgacaccagcgccgacaacaccttcatgcgc
aatcagttgcaggaagcccgctggttcatcaagagcctgcagagccgcaacgaaacactg
atgaaggtcgccacacagatcgtcgagcaccagcgtggcttccttgaatatggtgatgaa
gccatgaaaccgctggttctgcacgacattgccgaggcagtgggcatgcacgaatcgacg
atttcccgggtgaccacccagaagttcatgcatacgccgcgcggcatttacgagctgaaa
tacttcttttccagccacgtcagcacctctgaaggcggcgaatgctcatccacggctatt
cgcgcaatcatcaaaaaactggttgctgccgaaaatcagaaaaagccgttgagtgatagc
aagatcgctggtttactggaggcacaaggcattcaagtagcccgccgcacagtcgccaag
taccgcgaatcccttgggattgcgccctccagcgagcgcaagcgactgatgtga
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