Pseudomonas asturiensis: N015_24030
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Entry
N015_24030 CDS
T08470
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
past
Pseudomonas asturiensis
Pathway
past02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
past00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
N015_24030 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
past03021
]
N015_24030 (rpoD)
Transcription machinery [BR:
past03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
N015_24030 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r1_1
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
TMPIT
Motif
Other DBs
NCBI-ProteinID:
QHF05306
UniProt:
A0ABX6HI78
LinkDB
All DBs
Position
5361284..5363134
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AA seq
616 aa
AA seq
DB search
MSGKAQQQSRIKELITLGREQKYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGIPVHES
APDADALMLADADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIE
IAKRIEEGIREVMGAIAHFPGTVDHILSEYTRVTSEGGRLSDVLSGYIDPDDGIAPPAEV
PPPIDPKAVKAEGSDDDEEETADATDDEEEVESGPDPIIAAQRFGAVSDQMEITRKALKK
SGREDKHAIAELVALAELFMPIKLVPKQFEGLVERVRGALDRLRAQERAIMQLCVRDARM
PRADFLRQFPGNEVDESWTDALAKGKSKYAEAIGRLQPDIQRCQQKLSALEEETGLKIVE
IKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVD
KFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGRE
PTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATV
ESLKEATREVLSGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK
LRHPTRSEHLRSFLDE
NT seq
1851 nt
NT seq
+upstream
nt +downstream
nt
atgtccggaaaagcgcaacagcagtctcgtatcaaagagttgatcaccctgggtcgtgag
cagaagtatctgacttacgcagaggtcaacgaccacctgcccgaggatatttcagatcct
gagcaggtggaagacatcatccgcatgatcaacgacatggggatcccggtacacgagagt
gctccggatgcggacgccctgatgctggccgacgccgataccgatgaggcagccgcagaa
gaagcggccgcagcattggcagcggtcgaaaccgacatcggtcgtaccaccgatcccgtt
cgcatgtacatgcgtgagatgggcaccgttgaacttctgacccgtgaaggcgagatcgaa
atcgccaaacgtatcgaagaaggcatccgtgaagtgatgggcgcaatcgcgcacttccct
ggcacggttgaccatattctttccgaatacacacgtgtcacgagtgaaggcggccgcctg
tccgacgttctcagcggctatatcgacccggatgacggcattgcgccgccagccgaagtc
cctcctcccatcgaccctaaagccgtcaaggccgaaggctctgacgatgacgaagaggaa
actgctgacgctaccgacgacgaagaagaagtcgaaagcggtcctgatccgattatcgct
gcacagcgcttcggtgccgtgtccgatcagatggagatcacccgcaaggcgctcaagaag
tccggtcgcgaagacaagcacgccattgccgagctggtcgcccttgccgaactgttcatg
cccatcaagctggttccaaagcagtttgaaggtcttgtagagcgtgtacgcggtgccctt
gatcgtctgcgtgcccaggaacgcgccatcatgcagctgtgtgtacgtgatgcacgtatg
ccgcgcgccgacttccttcgccagttcccgggcaacgaagtcgacgaaagctggaccgac
gcgctggccaaaggcaagagcaaatacgccgaagccattggtcgcctgcagcctgacatc
cagcgttgccagcagaagctgtctgcgctcgaagaagaaacaggcctgaagatcgtcgag
atcaaggacatcaaccgtcgcatgtcgatcggtgaggccaaggcccgccgcgcgaagaaa
gagatggttgaagcgaacctgcgtctggtgatctccatcgccaagaagtacaccaaccgt
ggtctgcaattcctcgacctgatccaggaaggcaacatcggcttgatgaaagcggtggac
aagttcgaataccgtcgtggttacaagttctcgacgtatgccacctggtggatccgtcag
gcgattacccgctcgattgccgaccaggcacgcaccatccgtattccggtgcacatgatc
gagacgatcaacaagctcaaccgtatttcccgccagatgctgcaggaaatgggtcgcgaa
ccgaccccggaagagctgggtgaacgcatggaaatgcctgaggacaagatccgcaaggta
ttgaagatcgccaaagagccgatctccatggaaacaccgatcggcgacgacgaagattcg
cacctgggcgacttcatcgaagactcgaccatgcaatcgccaatcgacgttgcaacggtt
gaaagcctgaaagaagcgacacgcgaagtgctgtcgggcctcacggctcgtgaagccaag
gttctgcgcatgcgtttcggcatcgacatgaacaccgaccacacgctggaagaggtcggc
aaacagttcgacgtcacccgcgagcggattcgtcagatcgaagccaaggcactgcgcaaa
ctgcgtcacccgacccgaagcgaacacctgcgttcgttcctcgacgagtaa
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