Paenibacillus sp. S02: KAI36_00912
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Entry
KAI36_00912 CDS
T11472
Symbol
rtcB_1
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
pasz Paenibacillus sp. S02
Brite
KEGG Orthology (KO) [BR:
pasz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pasz03016
]
KAI36_00912 (rtcB_1)
Enzymes [BR:
pasz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
KAI36_00912 (rtcB_1)
Transfer RNA biogenesis [BR:
pasz03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
KAI36_00912 (rtcB_1)
Prokaryotic type
tRNA splicing ligases
KAI36_00912 (rtcB_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
QYK65776
LinkDB
All DBs
Position
1007892..1009118
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AA seq
408 aa
AA seq
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MAYQEINGVRVWGAPDPGALSQARTCAENGNVIQALLMADHHKGYSQPIGGVMVYDGQIS
PSGVGYDIGCGNKAVRTKLFAADIMPRISAVMDEIARHISFGVGRVNAIQVDHELFDDPD
WAVYAAIGKQEHDKLKSLAREQLGTVGSGNHFVDVFVEEATGQVWIANHFGSRGFGHKTA
SGFLNLAAGREFLGKAPGEHMDQPPVLLDMNSELGDMYYRAMRLAGRYAYAGRDYVIEQV
LGIIGTEADFTVHNHHNYAWKEQHDGRDTIVVRKGATPSAPGQMGFIGGSMGDISVIVRG
KDTVENRDSYYSTVHGAGRIMSRTQAAGKMNWKTRTRCGGQITDVQMKEAVRNYGVELRG
AGTDESPFVYRKLREVLDAHSETVEVMHELKPIGVCMAGANEFDPYKD
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atggcttatcaagaaatcaatggagtacgagtatggggagcacctgatccaggggcatta
tctcaagctcgtacatgtgccgaaaacggtaatgtgattcaagcgctgctgatggcagat
catcataaaggctacagtcagccgattggcggtgtgatggtgtatgacggacaaatttcg
ccttcaggtgtcgggtatgatatcggttgcgggaataaggcagtaagaaccaagctgttt
gcagcagatattatgccgcgtatttcagctgtgatggatgagattgcacgtcatatttcg
tttggcgtaggccgtgtgaatgcgattcaggtagaccatgagctgttcgatgacccggat
tgggcagtatatgcagcgattgggaaacaagaacatgacaaactgaagtccttggcgaga
gaacagctgggtacagtagggagtggcaatcattttgttgatgtattcgtggaggaagcg
acagggcaggtctggattgccaatcatttcggtagccggggctttgggcataaaacagca
agtgggtttctaaacttagctgctggacgagagttcctcggaaaggcgccgggagagcat
atggatcagccgcctgtgctgctggatatgaacagtgagctgggggacatgtactaccgt
gcgatgcgccttgctggacgctatgcgtatgcgggacgtgactacgtgatagaacaagtg
cttggtattatagggactgaagcggactttactgtgcataaccaccataattacgcatgg
aaagaacagcatgatgggcgtgacaccattgtggtccgcaaaggcgctactccctcggca
cctggccagatgggctttattggaggaagcatgggcgatatttcggtgattgtacgcgga
aaagatacggtagaaaatcgggattcctactatagtacagttcatggggcaggtcgtatt
atgagtcgtacccaggcagccggtaaaatgaattggaaaacccgcacacggtgtggtgga
caaatcacggatgtacaaatgaaggaggccgttcggaactatggtgtcgagctgcgcgga
gctggtacagatgaaagcccgttcgtctaccgtaaacttcgcgaggtactggacgctcat
tccgagaccgtggaggttatgcatgaactgaagcctattggggtatgcatggctggggct
aatgaatttgacccttataaggattaa
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