Paenibacillus sp. S02: KAI36_05334
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Entry
KAI36_05334 CDS
T11472
Symbol
dbpA
Name
(GenBank) ATP-dependent RNA helicase DbpA
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
pasz Paenibacillus sp. S02
Pathway
pasz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pasz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KAI36_05334 (dbpA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pasz03019
]
KAI36_05334 (dbpA)
03009 Ribosome biogenesis [BR:
pasz03009
]
KAI36_05334 (dbpA)
Enzymes [BR:
pasz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KAI36_05334 (dbpA)
Messenger RNA biogenesis [BR:
pasz03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KAI36_05334 (dbpA)
Ribosome biogenesis [BR:
pasz03009
]
Prokaryotic type
rRNA helicases
KAI36_05334 (dbpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_19
NAT10_TcmA_helicase
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
QYK70126
LinkDB
All DBs
Position
5954446..5955891
Genome browser
AA seq
481 aa
AA seq
DB search
MSQKHFTDYALSEEIVRALNSLGYETPTEIQTEVIPVALEKKDLVAKSQTGSGKTAAYGI
PICELVDWNENKPQALILTPTRELALQVTEDITNIGRFKRIKATPLYGKHPFHIQKAELK
QRTHVAVGTPGRVLDHIERGTLSLDRIAHLVIDEADEMLNMGFIEQVQSIIQALPSDRVT
MLFSATFPEDVATLSRKYMKNPVRIEIKATGITTATIDHSLIQVKESDKLALLQDLLIVE
NPDSCIIFCRTQENVDTLFRALADLEYPCDRIHGGMEQDERFEVMNAFRRGQFRYLIATD
VAARGIDITNITHVINYDIPLEKESYVHRTGRTGRAGKTGKAISLITPKDGRRLADIEAY
IGFAIPQVKAPSEEAVDLRREDFEQKLHVKTALKKDKREQLNQQIMKLNFNGGKKKKLRA
VDFVGTIAKLDGVTADDIGIITILDYATDVEILNGKGPLVLEIMKNTTVKGKLLKVRKGN
K
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagaagcattttacagattacgcattaagtgaagaaattgtaagagcgctcaat
agcttgggctatgagacgccaacagagattcagacggaagtcattcctgttgcgcttgag
aagaaggatcttgtcgccaaatcgcaaacaggtagcggcaaaacagcagcatatggtatt
ccaatttgtgagctagtagattggaatgagaataagccccaagcattaatcctgacacca
acccgtgaactcgcattacaggtcaccgaagacatcacgaatattggacgctttaagcgg
ataaaagcaacacccctttatgggaaacatccttttcatatccaaaaggctgagttaaaa
caaaggacgcatgtggctgtaggtacgccaggacgtgtactggatcatatcgaacgaggc
acgctatcgttagatcggattgcccatctcgtgattgatgaagctgatgagatgctgaat
atgggctttatcgagcaagtccagtcgattattcaagcgctgcctagtgaccgggttaca
atgttattctccgctaccttccctgaagatgtagccacactgtcacgtaaatatatgaaa
aatcctgttagaattgagattaaagcaactggtataacgaccgccacaattgatcactct
cttattcaggtgaaggagtcagacaagctggcactactgcaagatctgctcattgttgag
aatcctgacagctgcattattttctgtcgtacgcaggagaatgtagatacattattcaga
gcattggctgatctcgaatatccatgtgatcgcattcatggtggcatggagcaagacgag
cgatttgaggtaatgaatgcattcagaaggggtcaattccgttacttgattgcgacagat
gtcgccgccagagggattgatatcacgaatatcacccatgtcattaactacgatattccc
cttgagaaggaaagctatgttcaccgcacaggacgtacgggacgtgctggcaaaacgggg
aaagctatttccctcatcactcctaaggatggcagaagattagctgatattgaagcatat
attggattcgcgattccgcaggtaaaggccccctcagaagaagctgttgatctccgtaga
gaagattttgagcagaaactgcatgtaaaaaccgcactcaaaaaagataagcgcgagcaa
ttaaaccaacagattatgaagctgaattttaacggcggtaagaagaaaaaacttagagct
gtcgacttcgtggggaccatcgctaagcttgacggagtcaccgcagatgatatcgggatc
attacgattctggattatgcgacagatgttgagattctgaatggtaaaggtccactggtg
cttgagattatgaagaatacaaccgtaaagggtaagctgttaaaggtacgcaaagggaat
aagtag
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