Paraglaciecola sp. T6c: Patl_0252
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Entry
Patl_0252 CDS
T00372
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
pat
Paraglaciecola sp. T6c
Pathway
pat03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Patl_0252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pat03019
]
Patl_0252
03400 DNA repair and recombination proteins [BR:
pat03400
]
Patl_0252
Enzymes [BR:
pat01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Patl_0252
Messenger RNA biogenesis [BR:
pat03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Patl_0252
DNA repair and recombination proteins [BR:
pat03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Patl_0252
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
Helicase_Sgs1
zf-CXXC
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
ABG38784
UniProt:
A0A9J9B6Z3
LinkDB
All DBs
Position
complement(294077..295885)
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AA seq
602 aa
AA seq
DB search
MPPATSAINSAQSVLKTVFGYDEFRDGQRDVIEKILQGHDVLVLMPTGGGKSLCYQIPAL
VLEGLTIVVSPLIALMKDQVDALVASGVSAAYINSNLSSEEIHNVYRGMQDGHYKLIYVA
PERLMQFDFIQRLHSLELALFAVDEAHCVSHWGHDFRKEYRRLGQLKQQFPTVPVVGLTA
TADITTRSDILQQLALQDPFIFKGSFDRPNIRYNQLFKYKATDQVIQYVKQQEGSGIIYC
NSRKKVDDLSIALARQGINCAGYHAGLEGPIRDKIQRDFIQDNIDIIVATVAFGMGINKS
NVRFVVHFDLPRSVEAYYQETGRAGRDGMPAEALLLFDEKDAARIRQWIGMGDNPERLDI
ELQKFAAMEAFAEAQTCRRQVLLNYFSEYSAHDCGNCDICLDPPKRFDGTVPAQMVLSCI
YRLGQNVASQYVIDVLRGKKLKRIVEQGHDSLSTFAIGKDKSDAHWHNIINQLIHKGFLR
IDITQSAVLKLTEEARGVLAGKLELALAVPRLTIDSGKKSKLKEMNYDRKLFAKLKHLRK
SIAQREDVPPFVVFSDATLADMADKLPQSKTDFLEVNGVGQTKLDRYGSEFLAAISAYSQ
DL
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgccccccgctacaagcgctatcaacagcgcccaatccgttttgaaaacggttttcggt
tatgatgaatttcgtgacggtcagcgcgacgttatcgaaaagatattacaaggtcacgat
gtcttagtccttatgcctacgggaggagggaaatcactttgttaccaaataccagctttg
gtgcttgaggggttaaccattgttgtctcacctcttatcgctcttatgaaagaccaagta
gacgctcttgtcgcatcaggggtcagtgcggcttatattaattcaaacctcagcagcgaa
gaaatacacaatgtttatcgcggcatgcaagatggtcattacaaactcatttatgtcgcc
cctgagcgcttgatgcaatttgattttattcagcgcttacatagtctagaactcgccctt
tttgccgttgatgaagcccactgcgtttcacactggggtcacgactttcgtaaagagtac
cgtcggctaggtcaattaaaacaacagtttcctactgttccagtggtggggctgaccgct
acggcagatatcacaacgcgcagtgatatcttgcagcaactcgccctacaggatccgttc
atttttaagggcagctttgacaggcctaatatccgttacaaccaattgttcaaatacaaa
gcgactgatcaggtgattcagtacgtaaaacaacaagaaggtagcggcatcatatactgt
aacagccgcaagaaagttgatgatttgagtattgctcttgccagacaaggtatcaactgt
gccggttaccatgccggccttgaaggcccgatacgagacaaaatccaacgggactttatt
caagataacatcgacatcattgtggccactgtcgcatttggtatggggatcaataaatcc
aatgtgcgctttgtagttcatttcgatttgccacgtagcgtggaagcctattaccaagaa
acagggcgcgccgggcgagacggtatgccggcagaagcattacttttgtttgatgaaaaa
gatgctgcacggatacgccaatggattggtatgggtgataaccccgaacgtctagatatc
gaattgcaaaaatttgccgctatggaggcgttcgcagaggctcagacctgtaggcgacaa
gtcttactcaattacttttccgagtactctgcccatgactgcggtaactgtgatatttgc
ctcgatccgccgaagcgattcgatgggactgtgccggcgcagatggtgctgtcgtgtatt
tatcgtttgggacagaatgtcgccagccaatatgtcattgatgtattacgtggcaaaaag
ctcaaacgcattgttgagcaaggtcatgatagcctcagtacgtttgctattggtaaagat
aagtctgatgcgcactggcacaatataattaatcagctgatccataaaggttttctgcgc
atcgacattacacaaagcgccgtgcttaaactaactgaggaagccaggggtgtcctcgca
ggtaaattagaactggcgttagcggtgccgcgtctgacaattgattcaggtaaaaaatca
aagctcaaagagatgaactacgatcgtaaattgtttgccaagttaaagcatttacgaaag
tccattgcgcaaagggaagatgtgccgccattcgtcgttttcagcgacgcaactctggca
gacatggccgataagctgccccagtccaaaaccgactttttagaggtcaatggggttggt
caaaccaagctagaccgttatggcagcgagtttctagctgcaatatctgcttattcgcaa
gatttgtag
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